Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01013 ATGAATATTTCTTCATTTTCCTCCAGTTCATTATGGTTCACATGCTTTCATGTGGTTCTCTTTTCTTCTAGCCTACTATGTTTGCACTCTAAGTGCGCTGCTGGTGCCTTAGGaaatgacactgaccaattgtcactgctcaaattcaaagaagcagtggaacacgacccttttgaggtcttggcttcttggaatagttcaagtcacttttgcatgtggcatggaatcacatgcagcctcaggcatcaaagggtcacttcccttaacctacaagggtatgccttaaggggtttgataccacctgagataggtaatctcacttttctgagatatgtcaaccttcaaaacaacagcttctatggcataatcccacatgaaataggtcgtttgttcaggctgcaacagctgtatctcaccaacaacacattaaggggtcaaattcccaccaacttgtctagttgctatgaactcaaAAGCTTGAGTTTATCAGGAAACAAACTTGTTGGCAAAATTCCTATGGAGCTTGGCTTTCTAACTAAGCTAGAACTTCTATCTATTGGTATCAACAATTTGACCGGTGAAATACCTGCCTCTATAGGGAATCTTTCATCTCTTGGTGTTCTCATTTTGGGGATCAATAACTTGGAGGGAAAAGTGCCAAAAGAAATAGGCCATCTCAAAAACTTGACCCATATATCTATTGCAGGCAACAAACTATCTGGTGTATTTCCTTCTACACTCTATAATATGTCATTTCTCACTTTCTTCTCAGCTGGAGACAACCAATTTAGTGGCTCTCTTCCTACCAACATGTTCCTAACACTCCCTAATCTCCAACAATTTGGCATTGGTATGAACAAGATCTCAGGTCCTATCCCTGCTTCCATTTCAAATGCAAGCCGTTTGATGTTGTTTAACATCCCAAATAATAACTTTGTTGGACAAATTCCAACTGGCATAGGGAATCTCCAAGATGTGTGGTCCATTGCCATGGAACGCAATCATCTAGGGAGTAATTCATCTAATGACTTGGATTTCTTGACATCTTTGACAAACTGCACCAAGTTGCAAGTGTTGGATTTGAATCTAAACAACTTTGGTGGTTCTTTACCCAACTCTGTAGCCAACTTATCAAATCATCTAAGCCAGTTTTATATTGGTGGCAATCAGATCACTGGGAGTATTCCTGCAGGATTAGGAAATCTCATCAACTTGATTGGCTTTGACTTGGAGTTCAACCTTCTCACAGGGTCCATTCCAGCTTCTTTTGGGATGTTCCAAAAGATGCAATCTTTGACTTTAAATGTGAACAAACTTTCAGGAGAAATTCCACCATCCATTGGGAACCTTAGTCAATTGTTTCAACTTGACTTGTCAAATAATATGCTAGAAGGAAGCATTCCTCCTAGTGTTGGGAATTGCCAATATTTACAGTACCTTGACCTTTCACATAACACACTAAGTGGAACTATTCCTTTGCAGGTCTTTGGTTTTCCCTCCTTGTCATTGTTATTGAACTTGTCCCACAACTCGTTAAATGGTAGCctacccattgaagttggcaacctgaaaagcgtcaacaagttggatgtttcaaaaaatgctctctctggagaaattccttcaacaattggacaatgcataagcgtggaattccttaacatacatgggaattccttccaaggagccataccttcatccttggcttcactgaaaggccttcagtacttagatttgtcacaaaataacttttctggatcaattccagaaggtctagagagtattcctgttctgcagtacttgaatatttcctttaacaggttggatggtgaagtaccaacaaaaggtgtctttagaaatgcaagtgcaatatcaataaaaggaaatagtgacctttgtgggggtatcacaaagctacatctaccaccatgtcctgtcaaagttatgaccaacagaaaacatcaggtttggaagaaaatagtaataataatttctgtggttgtctttctcctacttttagcttcttttgttgctttctattggaagaaaaattcaaacaggagaacatctagttcaaaaacaacaatggaccctcttgccaaggtctcatatcagacactccaccaagcaacaaatggattctctcccaataacttgataggatctggtgcttttggctttgtgtataaaggaaatataattatggattcagaggaaagagttgttgctattaaggtcctgaatcttcaaaagaaaggagctcacaaaagtttcattgctgaatgcaatgcactcagaaatatccgtcacagaaacctggtcaagattctaacatgctgctccagcatggattacaaaggagatgaattcaaagctctagtttttgactacatggaaaacggaagtttagagaaatggttgcattccgagtcagaaattggagatcaaccaactttgaaccttcttcaacggctaaacattattgtagaagttggttctgctttacactatcttcactatgaatgtgaacagctaattgttcactgtgatttgaagccaaacaatatccttcttgataatgaaatggttgctcatgtaagtgattttggactagctagacttctctgtgccatcaatggtgtctctcgtctacaatctagcacgatcggaatcaagggaactgttggatatgctcctccag 2701 0.1729 MNISSFSSSSLWFTCFHVVLFSSSLLCLHSKCAAGALGNDTDQLSLLKFKEAVEHDPFEVLASWNSSSHFCMWHGITCSLRHQRVTSLNLQGYALRGLIPPEIGNLTFLRYVNLQNNSFYGIIPHEIGRLFRLQQLYLTNNTLRGQIPTNLSSCYELKSLSLSGNKLVGKIPMELGFLTKLELLSIGINNLTGEIPASIGNLSSLGVLILGINNLEGKVPKEIGHLKNLTHISIAGNKLSGVFPSTLYNMSFLTFFSAGDNQFSGSLPTNMFLTLPNLQQFGIGMNKISGPIPASISNASRLMLFNIPNNNFVGQIPTGIGNLQDVWSIAMERNHLGSNSSNDLDFLTSLTNCTKLQVLDLNLNNFGGSLPNSVANLSNHLSQFYIGGNQITGSIPAGLGNLINLIGFDLEFNLLTGSIPASFGMFQKMQSLTLNVNKLSGEIPPSIGNLSQLFQLDLSNNMLEGSIPPSVGNCQYLQYLDLSHNTLSGTIPLQVFGFPSLSLLLNLSHNSLNGSLPIEVGNLKSVNKLDVSKNALSGEIPSTIGQCISVEFLNIHGNSFQGAIPSSLASLKGLQYLDLSQNNFSGSIPEGLESIPVLQYLNISFNRLDGEVPTKGVFRNASAISIKGNSDLCGGITKLHLPPCPVKVMTNRKHQVWKKIVIIISVVVFLLLLASFVAFYWKKNSNRRTSSSKTTMDPLAKVSYQTLHQATNGFSPNNLIGSGAFGFVYKGNIIMDSEERVVAIKVLNLQKKGAHKSFIAECNALRNIRHRNLVKILTCCSSMDYKGDEFKALVFDYMENGSLEKWLHSESEIGDQPTLNLLQRLNIIVEVGSALHYLHYECEQLIVHCDLKPNNILLDNEMVAHVSDFGLARLLCAINGVSRLQSSTIGIKGTVGYAPP 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01013 900 Pfam Protein kinase domain 717 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01013 900 PANTHER LRR RECEPTOR-LIKE KINASE 27 899 - -
Cca11g01013 900 Pfam Leucine rich repeat 553 608 IPR001611 GO:0005515
Cca11g01013 900 PRINTS Leucine-rich repeat signature 477 490 - -
Cca11g01013 900 PRINTS Leucine-rich repeat signature 571 584 - -
Cca11g01013 900 Gene3D Ribonuclease Inhibitor 37 217 IPR032675 -
Cca11g01013 900 Pfam Leucine rich repeat N-terminal domain 40 79 IPR013210 -
Cca11g01013 900 Gene3D Transferase(Phosphotransferase) domain 1 798 900 - -
Cca11g01013 900 SMART LRR_typ_2 571 594 IPR003591 -
Cca11g01013 900 SMART LRR_typ_2 595 620 IPR003591 -
Cca11g01013 900 SMART LRR_typ_2 178 202 IPR003591 -
Cca11g01013 900 SMART LRR_typ_2 523 547 IPR003591 -
Cca11g01013 900 SMART LRR_typ_2 130 154 IPR003591 -
Cca11g01013 900 SMART LRR_typ_2 226 249 IPR003591 -
Cca11g01013 900 SMART LRR_typ_2 450 474 IPR003591 -
Cca11g01013 900 Gene3D Ribonuclease Inhibitor 273 334 IPR032675 -
Cca11g01013 900 Gene3D Ribonuclease Inhibitor 218 272 IPR032675 -
Cca11g01013 900 Gene3D Phosphorylase Kinase; domain 1 675 797 - -
Cca11g01013 900 PANTHER OS04G0122200 PROTEIN 27 899 - -
Cca11g01013 900 SMART serkin_6 714 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01013 900 ProSitePatterns Serine/Threonine protein kinases active-site signature. 846 858 IPR008271 GO:0004672|GO:0006468
Cca11g01013 900 ProSiteProfiles Protein kinase domain profile. 714 900 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01013 900 Gene3D Ribonuclease Inhibitor 337 645 IPR032675 -
Cca11g01013 900 ProSitePatterns Protein kinases ATP-binding region signature. 720 745 IPR017441 GO:0005524
Cca11g01013 900 SUPERFAMILY L domain-like 380 634 - -
Cca11g01013 900 SUPERFAMILY Protein kinase-like (PK-like) 686 900 IPR011009 -
Cca11g01013 900 SUPERFAMILY L domain-like 42 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01013 Cca-Chr11 23321148 23323848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01013 39 900 Receptor kinase-like Gene Family AT3G47570 47.254 0.0 752
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Cca11g01013 Pkinase 2e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01013 - - gmx:102664380 1025