Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01003 ATGAGGTTCATGACCACCGCAATCTTTACTTGGCAAAGTACAAGGGGAGTGCTTGAAATCTTGGGTTGTGTTCAGTTGGCAGGATTGTATTTGGAGGGGAAAGATCGTGAGGAATTGAGAGCAGATGAACAGGGAAATGAAACAACACCTGCCAAGTCAACACCTCACATGTTTTGCAAAACGCTTACAGCCTTAGACACCAGCACTCATGGGGGGTTCTCAGTCCCTCGCAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAGAGACCCTCTCAAGAGCTTGTTGCCAAAGACCTGCATGGTGTGGAATGGAAATTTAGACATATTTACAGAGGTCAGCCAAGGCGGCATCTGCTCACTACTGGCTGGAGTATCTTTGTTAACCAAAAGAATCTCGTTTCTGGAGATGCAGTTCTGTTTCTAAGGGGTGAAAATGGAGAATTGAGATTGGGAATCCGAAAAGCTGCTCGACCAAGAAATGGTCTTCCTGAATCAATTGTTGGTAGCCAGAGTTATTATCCCAATTTCCTTTCTTCTGTGGCCAATGCTATATTCGCGAAAAGCATGTTTCATGTTTTCTACAGTCCACGGTACTATATTAATGGATCAGATTTTTTGTTTTGCAAAATGTTTGAACTTCATACTCTAATTATTGGACCTTTGATTTCCATTTTGTCGTGGAAACTATAG 702 0.4274 MRFMTTAIFTWQSTRGVLEILGCVQLAGLYLEGKDREELRADEQGNETTPAKSTPHMFCKTLTALDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVNQKNLVSGDAVLFLRGENGELRLGIRKAARPRNGLPESIVGSQSYYPNFLSSVANAIFAKSMFHVFYSPRYYINGSDFLFCKMFELHTLIIGPLISILSWKL 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01003 233 CDD B3_DNA 56 158 IPR003340 GO:0003677
Cca11g01003 233 SMART B3_2 58 160 IPR003340 GO:0003677
Cca11g01003 233 ProSiteProfiles B3 DNA-binding domain profile. 58 160 IPR003340 GO:0003677
Cca11g01003 233 Pfam B3 DNA binding domain 58 159 IPR003340 GO:0003677
Cca11g01003 233 SUPERFAMILY DNA-binding pseudobarrel domain 49 171 IPR015300 -
Cca11g01003 233 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 31 202 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cca11g01003 233 PANTHER AUXIN RESPONSE FACTOR 31 202 - -
Cca11g01003 233 Gene3D - 56 159 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01003 Cca-Chr11 22880658 22882020 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01003 18 201 B3 DNA Binding Superfamily AT5G60450 75.000 3.85e-91 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca11g01003 B3 1.4e-21 CL0405