Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00999 ATGCCAGAAAACTGCGTAGCACCCAAATCAGACCACACCAATAGTCACCCTGAGGGAAACATATCAGCCCTTCCAACACAAAAAAATGAGCAATCATTTCCCAAACTCACCATGTACCCCATAACTTTGAAGTTTGAGGAGTTGGTGTACAAAGTTAAAGTAGAGAAGAAGGGTGTGTGTTGGGGGAGCACAAGGAGTGGCAGAGAGAAGACCATACTTAAAGGAGTGACAGGCATGGTGTGTCCAGGAGAAATAATGGTCATGTTGGGGCCATCTGGAAGTGGCAAAACCACACTTCTCACAGCCCTTGGAGGAAGGCTTAGTGGCAAAGTATCAGGAATGGTGACATACAACAACCAACCCTTTTCAGGTGCCATGAAGAGAAGAACAGGTTTTGTGGCTCAGGATGATGTGCTATACCCTCATCTCACAGTCACTGAAACACTACTCTTCACTGCACTTCTGAGGCTTCCCAGCACCTTGACCAAGGATGAGAAGGTTCACCATGTGGAGAGTGTTATCAATGAGCTAGGACTGAGTAGGTGCAGGGGTAGCATGATTGGAGGACCTCTTTTCAGAGGGATATCAGGAGGGGAGAGAAAGAGGGTCAGCATAGGCCAGGAAATGCTCATCAATCCAAGCCTGTTGCTGCTGGATGAGCCCACTTCAGGTTTGGACTCTACAACAGCACAAAGGATCATAAGCACAATCAAAGGCTTGGCAAGCGGGGGTAGAACTGTTGTCACCACCATTCACCAACCCTCTAGTCGCCTCTATCACATGTTTGATAAACTGATCTTGCTCTCTGAAGGAAGCCCCATCTATTGTGGCCCTGCTTCAACTGCAATGGAGTATTTTTCTTCTGTTGGTTTTTCCACATCCATCATTGTCAATCCTGCTGATTTTTTGCTTGATCTTGCCAATGGGATTGCTCCGGACTCCTCCAAGCATGCAACTGAGCAAAGTGAGAGTCAGGAGGCAGAAAAGAAGTTGGTGAGAGAAGCTTTAATCTCTGCTTATGAAAATAACATAGCTCCTAGGCTGAAGGATGAGGTATGTAGCTTGGAGGTGAATAGCTACAAAGTCATGAAGGATGCTTCCACAAGAAACCACACAAAACCGGAGCAATGGTGCACAAGTTGGTGGCATCAATTCAAAGTGCTATTGCAAAGGGGCCTTAGGGAGAGAAGGTTTGAAGCTTTCAACAGGCTGAGAATATTCCAAGTCATAAGTGTTGCTTTTCTTGGTGGACTCCTGTGGTGGCACACCCCAGAGTCACACATTGGAGATCGGATAGCCCTGCTCTTTTTCTTCTCTGTTTTCTGGGGATTCTACCCTCTCTACAATGCTGTCTTCACATTTCCACAAGAGAGAAGAATGCTGATCAAGGAACGTTCATCAGGAATGTACCGTCTTTCATCCTACTTTCTAGCAAGAACAGTAGGAGACTTGCCAATAGAGCTTGCACTTCCAACTGCATTTGTGATCATAATCTATTGGATGGGAGGGCTCAAGCCTCATCCAATGACCTTCATCCTTTCCCTCCTTGTGGTCCTCTACAGTGTCCTTGTCTCTCAAAGCCTTGGCTTAGCCTTTGGTGCCTTTTTGATGGAGGTTAAACAGGCCACAACTTTGGCTTCTGTCACAACCCTTGTGTTCCTCATTGCTGGAGGCTACTACATACAACAGATTCCTCCCTTCATAGAGTGGCTCAAGTACGTGAGCTATAGCTTCTATTGTTACAAGCTTCTTCTTGGTGTTCAGTACAATGATGGTGATTATTATGAGTGCTCAAAGGGTGTCATGTGCAAGGTTGCAGATTTTCCTCCAATCAAATCAGTGGGATTGAATCACTTGTGGGTTGATGTGGCTATTATGGCCATGATGTTGGTAGGTTACAGACTAGCTGCATATTTAGCACTGCAGAGAGTGAGGTAG 1938 0.4598 MPENCVAPKSDHTNSHPEGNISALPTQKNEQSFPKLTMYPITLKFEELVYKVKVEKKGVCWGSTRSGREKTILKGVTGMVCPGEIMVMLGPSGSGKTTLLTALGGRLSGKVSGMVTYNNQPFSGAMKRRTGFVAQDDVLYPHLTVTETLLFTALLRLPSTLTKDEKVHHVESVINELGLSRCRGSMIGGPLFRGISGGERKRVSIGQEMLINPSLLLLDEPTSGLDSTTAQRIISTIKGLASGGRTVVTTIHQPSSRLYHMFDKLILLSEGSPIYCGPASTAMEYFSSVGFSTSIIVNPADFLLDLANGIAPDSSKHATEQSESQEAEKKLVREALISAYENNIAPRLKDEVCSLEVNSYKVMKDASTRNHTKPEQWCTSWWHQFKVLLQRGLRERRFEAFNRLRIFQVISVAFLGGLLWWHTPESHIGDRIALLFFFSVFWGFYPLYNAVFTFPQERRMLIKERSSGMYRLSSYFLARTVGDLPIELALPTAFVIIIYWMGGLKPHPMTFILSLLVVLYSVLVSQSLGLAFGAFLMEVKQATTLASVTTLVFLIAGGYYIQQIPPFIEWLKYVSYSFYCYKLLLGVQYNDGDYYECSKGVMCKVADFPPIKSVGLNHLWVDVAIMAMMLVGYRLAAYLALQRVR 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00999 645 Pfam ABC-2 type transporter 384 589 IPR013525 GO:0016020|GO:0140359
Cca11g00999 645 CDD ABCG_EPDR 40 277 - -
Cca11g00999 645 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 20 643 - -
Cca11g00999 645 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 288 IPR027417 -
Cca11g00999 645 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 43 295 IPR003439 GO:0005524
Cca11g00999 645 MobiDBLite consensus disorder prediction 8 27 - -
Cca11g00999 645 Pfam ABC transporter 73 223 IPR003439 GO:0005524
Cca11g00999 645 SMART AAA_5 82 272 IPR003593 -
Cca11g00999 645 Pfam ABC-2 type transporter 252 319 IPR043926 GO:0140359
Cca11g00999 645 Gene3D - 60 290 IPR027417 -
Cca11g00999 645 MobiDBLite consensus disorder prediction 1 27 - -
Cca11g00999 645 PANTHER ABC TRANSPORTER, G1, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 20 643 - -
Cca11g00999 645 ProSitePatterns ABC transporters family signature. 195 209 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00999 Cca-Chr11 22180689 22184335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00999 72 272 Calmodulin-binding Proteins AT2G36910 28.230 1.26e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00999 K05681 - gmx:100776279 1150.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00999 11 22180689 22184335 Cca11g00999 11 22180689 22184335 ECH