Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00992 ATGATCACTGATGTGCCCCCATCTATGGCTTCAAACGGTAGGTCAAGCAGATATTCCTTTGGCTCTAGCAATGGCAATGATGATACCCCTGCACGCAATGGTGTTGCTGCTGGTAATGCTGATGACTATGATAGTGATAGCTCCAATTTTGCACCACCCACGCCATCAACTATGTCAATGGCTGTTCCAGCAGAACTTGCTGGAGCTGTACCCTTGATGAACAGATTCCAAGTGGATGGGTTTTTAAAATCAATGCAGAAACAAATTCAATCTGCTGGGAAACGAGGATTTTTTTCTAAAAGATCCGTAGGTCCCCAAGTTAGAGAAAAAATTACATTTGAGGACATGTTGAGTTTTCAAAAGGATCCAATTCCAACATCATTGCTCAAGTTAAATGTTGATTTAGTAAGTCGGGCAACAAAATTATTTCAAATAATTTTGAAATATATGGGGCTTGATCCACCTGATCGTGTAACTCCAATAAGCTTAGATGAACGAGTTGAGCTTCAAAGTTTGAAACGACCAGAACTCCGAGATGAACTTTTTGTTCAGATATCAAAGCAAACCAGAAATAACCCCGAGAGGCAATATTTGATTAAAGCATGGGAGCTCATGTATTTGTGTGCATCCTCAATGTCTCCTAGTAAAGATATTAGCAGTTATCTATCAGAATACATTCATAACATAGCAAATGGCATGGCTACTGATTCTGAGATCCAAGTCCTTGCATTAAATACATTAAATGCTTTGAAGCGTTCTGTCAAGGCTGGTCCCAGACATATAATTCCTGGGCGCGAGGAGATTGAAGCTCTGTTGACTGGGAGAAAGCTTACAACTATAGTGTTCTTCCTAGATGAAACATTTGAAGAAATTACATACGACATGTCAACCACAGTTGCTGATGCTGTTGAGGAACTTGCAGGGCTCATTAAACTGTCAACACACTCCAGCTTTAGTCTATTTGAATGTCGTAAAGTTGTTACTGGCTCCAAATCACCTGATCCCGGGAATGGCATTCTGACAGCTTCTTTTATGGTTTTCTCAGAGGAGTACATTGGGTTAGATGATAACAAATATATTGGGGATCTCCTGGCGGAGTTCAAAGCCACAAAGGATCGAAGTAAAGGAGAAATTTTGCATTGTAAACTGATATTCAAGAAAAAGTTATTTCGTGAGTCAGATGAAGCTGTGACAGAACCTATGTTTGTGCAGCTGTCCTATGTACAATTGCAGCATGATTATATTTTGGGCAATTATCCTATAGGAAGAGATGATGCTGCTCAGCTTTCTGCATTACAAATCTTGGCTGAGATTGGATTTGTTAGCACACCCGAATCCTCATGCACTGACTGGAATTCGCTTCTGGAGCGATTTCTGCCTAGACAAATTTTAATGACACGAGCAAAACGGGAATGGGAGTATGACATTCTTTCTCGTTATCGTTCATTGGAGAATCTGTCAAAAGATGATGCGCGACAACAATTTCTGCGTATACTGAGAGCACTTCCTTATGGGAATTCTGTTTTCTTCAATGTTCGCAAGATTGATGATCCAATTGGACTCTTACCTGGTCGGATAATTTTGGGAATTAATAAAAGAGGGATTCATTTTTTCCGTCCAGTTCCTAAGGAATATTTGCACTCAGCTGAGTTGAGAGACATAATGCAATTTGGAAGTAGCAATACTGCAGTCTTTTTTAAAATGCGAGTTGCAGGTGTTCTCCACATATTTCAGTTTGAAACCAAGCAGGGTGAAGAAATTTGTGTAGCTCTTCAGACGCATATAAATGATGTAATGCTGCGCCGCTATTCAAAAGCACGATCTGCTGCTTCTGCTGTTGGTTGTGGTTCTTTGAATGGAGATATTTCTAATAATTCTAAACCTCCTAATCCGGAATTATATGAGAAACGTGTTCAAGAATTATCAAAACTTATAGAAGAATCTCAGAAAAATGCCGATCAATTGCTTGGAGAATTACGTGTGAAACAAAAACAAGAAGAGAAAATGCAAGAAGAATTGGATGGCTTGAAAGAATCTTTAAAAGCTGATAAGCAAAATCTTGATGCAGTTACAAGTGACCGTGATAGACTTAGATCATTATGCAATGAAAAAGAGAAGGAACTACAGGCTGCTATTCTAGAAAAAAGGAATATGGAATCAAGGATGGCTAAGTTAAGTAATGCGGTGATAGAGAACACTGCCAAGAAGGATCTTGCTAATGCTGGAAATAAACAAGTGACTCAAAAGCTTGAAGATGAGCTAAAAAATTGTAAATATGAGCTACATGCAGCCGCAGAAACTATCAAAAGCTTGAAAAGTGAAAAATTGATTTTGGAACAAAAGTTATATGCACTTGAGAAGAGAAATGCTGGAGAGATTAGTTCCCTTCAATGGAAACTTGAGCAAGAACGCAAAGCTGTGAAGTCTGAAGTGTATGATCTCGAAAGAAAGCTAGAAGGGTGTAGGCAAGAATTACTGGCTGCTAAGTCTACCATTTCAGCCAAGGATTCTGAGTTGGCTATGTTCCAGAATAACTTGAAGGAACTAGAAGAATTGAGAGATATGAAAGAGGACATCGATAGAAAGAATGAACAGACAGCTGCTATACTGAAAATGCAAGGGGCTCAATTAGCTGAAATGGAAGCACTTTATAAGGAAGAACAGGTTTTAAGGAAGCGCTATTTTAATGTAATAGAAGACATGAAAGGCAAGATCAGAGTTTACTGTCGACTGAGGCCTCTTAATGAAAAAGAGATTGCTGAGAAAGAAAGAGGAGTTCTTACTGTGGTGGACGAGTTTACAGTTGAATATCCATGGAAAGATGATAAGCCAAAGCAGTACATATATGACCGCGTTTTTGATGCTGATGCAACACAAGAAAATGTATTTGAGGATACAAAGTATTTGGTGCAGTCTGCTGTAGATGGTTATAATGTTTGCATATTTGCTTATGGTCAAACTGGCTCTGGAAAGACATTTACAATCTATGGATCTGACAACAACCCTGGACTTACTCCTCGTGCAATCGCAGAACTTTTTAGAATTTTAAGAAGAGATAATAACAAGTATTCGTTTTCCTTGAAGGCATACATGGTGGAATTGTATCAAGATACCCTCATAGATCTTTTGTTACCAAAGAATGGAAAACATTCAAAATTGGATATCAAGAAGGATTCAACGGGAATGGTAGTTGTGGAAAATGTGACAGTTTTGTCTCTTTCTACAATTGAAGAATTGAGTAGTATAATACAAAGAGGATCAGAACGGCGACATATATCTGGAACTCAAATGAATGATGAAAGTTCAAGATCTCATCTCATTCTATCAATTGTGATTGAAAGTACCAACCTACAAAGTCAGTCAGTTGCAAGGGGAAAGCTGAGTTTTGTGGACCTTGCTGGTTCAGAAAGAGTGAAAAAGTCAGGTTCTACTGGGAGTCAGCTTAAGGAAGCTCAAAGCATTAACAAGTCATTATCAGCTCTTGGAGATGTAATTAGTTCTTTGTCTTCTGGAGGTCAACACACACCATACAGGAACCACAAGTTAACCATGTTGATGAGTGATTCACTAGGTGGTAATGCCAAAACTCTCATGTTTGTGAATGTTTCTCCAGCAGAATCAAATTTGGATGAGACACATAACTCTCTCATGTATGCATCTCGAGTGAGATCCATTGTGAATGACCCCAGCAAAAATGTTTGCTCAAAAGAGATAGCAAGGCTGAAGAAGTTGGTTGCATTTTGGAAACAGCAAGCTGGTAGAGGACCTGAGTATGATGATTTAGAAGAAATTCAAGATGAAAGACAAACTAAAGAGAATGGTAATGGCAAATAG 3834 0.3871 MITDVPPSMASNGRSSRYSFGSSNGNDDTPARNGVAAGNADDYDSDSSNFAPPTPSTMSMAVPAELAGAVPLMNRFQVDGFLKSMQKQIQSAGKRGFFSKRSVGPQVREKITFEDMLSFQKDPIPTSLLKLNVDLVSRATKLFQIILKYMGLDPPDRVTPISLDERVELQSLKRPELRDELFVQISKQTRNNPERQYLIKAWELMYLCASSMSPSKDISSYLSEYIHNIANGMATDSEIQVLALNTLNALKRSVKAGPRHIIPGREEIEALLTGRKLTTIVFFLDETFEEITYDMSTTVADAVEELAGLIKLSTHSSFSLFECRKVVTGSKSPDPGNGILTASFMVFSEEYIGLDDNKYIGDLLAEFKATKDRSKGEILHCKLIFKKKLFRESDEAVTEPMFVQLSYVQLQHDYILGNYPIGRDDAAQLSALQILAEIGFVSTPESSCTDWNSLLERFLPRQILMTRAKREWEYDILSRYRSLENLSKDDARQQFLRILRALPYGNSVFFNVRKIDDPIGLLPGRIILGINKRGIHFFRPVPKEYLHSAELRDIMQFGSSNTAVFFKMRVAGVLHIFQFETKQGEEICVALQTHINDVMLRRYSKARSAASAVGCGSLNGDISNNSKPPNPELYEKRVQELSKLIEESQKNADQLLGELRVKQKQEEKMQEELDGLKESLKADKQNLDAVTSDRDRLRSLCNEKEKELQAAILEKRNMESRMAKLSNAVIENTAKKDLANAGNKQVTQKLEDELKNCKYELHAAAETIKSLKSEKLILEQKLYALEKRNAGEISSLQWKLEQERKAVKSEVYDLERKLEGCRQELLAAKSTISAKDSELAMFQNNLKELEELRDMKEDIDRKNEQTAAILKMQGAQLAEMEALYKEEQVLRKRYFNVIEDMKGKIRVYCRLRPLNEKEIAEKERGVLTVVDEFTVEYPWKDDKPKQYIYDRVFDADATQENVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSDNNPGLTPRAIAELFRILRRDNNKYSFSLKAYMVELYQDTLIDLLLPKNGKHSKLDIKKDSTGMVVVENVTVLSLSTIEELSSIIQRGSERRHISGTQMNDESSRSHLILSIVIESTNLQSQSVARGKLSFVDLAGSERVKKSGSTGSQLKEAQSINKSLSALGDVISSLSSGGQHTPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETHNSLMYASRVRSIVNDPSKNVCSKEIARLKKLVAFWKQQAGRGPEYDDLEEIQDERQTKENGNGK 1277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00992 1277 Pfam MyTH4 domain 170 270 IPR000857 GO:0005856
Cca11g00992 1277 Coils Coil 804 824 - -
Cca11g00992 1277 MobiDBLite consensus disorder prediction 1255 1277 - -
Cca11g00992 1277 SMART B41_5 273 509 IPR019749 -
Cca11g00992 1277 Coils Coil 754 788 - -
Cca11g00992 1277 Coils Coil 638 728 - -
Cca11g00992 1277 MobiDBLite consensus disorder prediction 1 56 - -
Cca11g00992 1277 ProSiteProfiles Kinesin motor domain profile. 904 1225 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca11g00992 1277 SUPERFAMILY Prismane protein-like 847 921 IPR011254 GO:0003824|GO:0016491
Cca11g00992 1277 Gene3D Kinesin motor domain 891 1227 IPR036961 -
Cca11g00992 1277 SUPERFAMILY PH domain-like 509 597 - -
Cca11g00992 1277 Gene3D - 276 391 - -
Cca11g00992 1277 PANTHER KINESIN-RELATED 624 1276 IPR027640 GO:0003777|GO:0007018
Cca11g00992 1277 SUPERFAMILY Second domain of FERM 386 504 IPR035963 -
Cca11g00992 1277 CDD FERM_B-lobe 403 502 IPR019748 -
Cca11g00992 1277 MobiDBLite consensus disorder prediction 42 56 - -
Cca11g00992 1277 MobiDBLite consensus disorder prediction 1 30 - -
Cca11g00992 1277 ProSiteProfiles MyTH4 domain profile. 119 272 IPR000857 GO:0005856
Cca11g00992 1277 SMART kinesin_4 902 1233 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca11g00992 1277 ProSitePatterns Kinesin motor domain signature. 1125 1136 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cca11g00992 1277 MobiDBLite consensus disorder prediction 1252 1277 - -
Cca11g00992 1277 CDD KISc_C_terminal 902 1227 - -
Cca11g00992 1277 Pfam Kinesin motor domain 910 1225 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca11g00992 1277 ProSiteProfiles FERM domain profile. 277 603 IPR000299 GO:0005856
Cca11g00992 1277 CDD FERM_C_KCBP 506 613 - -
Cca11g00992 1277 Gene3D MyTH4 domain 98 274 IPR038185 -
Cca11g00992 1277 PANTHER KINESIN-LIKE CALMODULIN-BINDING PROTEIN 624 1276 - -
Cca11g00992 1277 Coils Coil 832 869 - -
Cca11g00992 1277 Gene3D - 507 615 IPR011993 -
Cca11g00992 1277 Gene3D - 1228 1275 - -
Cca11g00992 1277 Gene3D - 400 502 IPR014352 -
Cca11g00992 1277 Pfam FERM central domain 394 509 IPR019748 -
Cca11g00992 1277 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 904 1252 IPR027417 -
Cca11g00992 1277 SMART MyTH4_1 119 272 IPR000857 GO:0005856
Cca11g00992 1277 PRINTS Kinesin heavy chain signature 1126 1144 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca11g00992 1277 PRINTS Kinesin heavy chain signature 1095 1112 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca11g00992 1277 PRINTS Kinesin heavy chain signature 1175 1196 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca11g00992 1277 PRINTS Kinesin heavy chain signature 976 997 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00992 Cca-Chr11 21788421 21798314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00992 51 1275 Calmodulin-binding Proteins AT5G65930 72.646 0.0 1801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00992 - - gmx:100807481 2254.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00992 11 21788421 21798314 Cca11g00992 11 21788421 21798314 ECH