Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00983 ATGGTTGCCGCTGCTGATCTTCTCATGCCGGAAATGGGCGCCAGAAAGTTGCACGTGCTCGCGGTTGATGACAGCCACATCGACCGCAAGGTCATTGAACGCTTGCTAAAAATCTCGTCTTGTAAAGTGACGGTGGTGGAGAGTGGGAGCATGGCTCTACAGTATATGGGGTTGGATGGAGATAAGAGCTCCATTGGTTTTGATGGTGTGGAGGTTAATTTGATTATGACAGACTATTCTATGCCAGGGATGACTGGATATGAATTACTCAAGAAGATAAAGGAGTCGTCTGTATTTAGGGAGATTCCAGTGGTGGTTATGTCTTTTGAGAATATCTTGACCCGAATTGATAGTTGGATGCCTTTGATTTTCTGGCTGAATTCAGAGGTTAAGAGTGCTGTTGGGAGTGAGGAGGCTGTGGGCACTGTGCTACTGCCGTTGGCGGCGGCGCTACGTGAACTCAGTGAGAACGGTTATATCTCTTTTATTTAA 492 0.4675 MVAAADLLMPEMGARKLHVLAVDDSHIDRKVIERLLKISSCKVTVVESGSMALQYMGLDGDKSSIGFDGVEVNLIMTDYSMPGMTGYELLKKIKESSVFREIPVVVMSFENILTRIDSWMPLIFWLNSEVKSAVGSEEAVGTVLLPLAAALRELSENGYISFI 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00983 163 ProSiteProfiles Response regulatory domain profile. 18 160 IPR001789 GO:0000160
Cca11g00983 163 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 118 IPR045279 GO:0009736
Cca11g00983 163 Gene3D - 16 112 - -
Cca11g00983 163 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR6 12 118 - -
Cca11g00983 163 SMART REC_2 17 134 IPR001789 GO:0000160
Cca11g00983 163 Pfam Response regulator receiver domain 19 110 IPR001789 GO:0000160
Cca11g00983 163 SUPERFAMILY CheY-like 15 109 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00983 Cca-Chr11 21404211 21405116 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00983 17 120 Response Regulator Gene Family AT5G62920 75.000 7.68e-55 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca11g00983 Response_reg 1.5e-13 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00983 K14492 - gmx:100819165 195.282