Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00977 ATGGGTGATGCAAAAGAGAGTGAGGAAGCAGGGCAGAATGTACCCTTTGCTGAAGCACAGGTTCAGCCTGAAGGTTTGGCTGCTCCTGTGTCCGTTGAGGATACTTTAAATTATGTTGAAAATTGGAAGGTGGAGGTAGACGCACCTATGGAGGATAAAAATGTGAAACCAGAAGCCAATTCAGAGTGCATTCCACAACAAAATGTTGTAAATAGCAAAAATACTCTTCACTCAGTCCCTGCAATAGACAGTGTTCAAGCTTTAAATAAAACCGAAGGTGAATATGCATCAGTTGTGAAGACCAAAGCTGAAGAAGTTCCTCAGTGTGATAAGGGCATTGAGAATGATGCTAATGTTTGTCAAAACAATGCTGATGTTGCTGACACGGCTGTAGAGGTGAAGCCGAAATCTTTTGAAGTGACTGATAGTAAAACTCACAATAATGATGACTCCAACTCCATAAACTCTGGTCATCATGAGCCTAATACTCCAGAAGCTGTTCCTACTGATATAAAACCTGAAATCAAGAGTGGATTAGACATTGAGAATAAAATTAATGAAAAGCAGGTTGCTGTTGCACATGTAGATAATGGAAATTCGATCTCAAAGAACTTGTGTTTTTTGGATCCCGACTATTCATATGATGGTAATGAGTCAGGAACAGAAGAGGAGCAGTCAGCTTTTATGAAGGAGCTTGAAAATTTCTTTAGGGAGAGGAGCATGGAATTCAAACCACCCAAGTTCTATAAAGAGGGGCTCAATTGCCTTAAGTTATGGAGATCTGTAAACAGATTGGGTGGCTATGATAAGGTCACCTCATGTAAATTGTGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCGAAGACATGCACCACAGTTTCATGGTCTTTTCGGGTTTTTTATGAGAAGGCACTTCTTGACTATGAAAGACATAAAACAAAAGGTGGTGAGCTGAATCTACCTATTACTTCCCATTCAGAGCCAATGAATTTTGAAAATCAGTGTGTCCAGGGTTCAGCATCAGGTAGGGCACGGAGAGATGCTGCAGCAAGGGCTATGCAGGGTTGGCACTCACAACGTCTCCTTAGCAATGGTGAAGTTGGTGATCCTATTATTAAGGATAGGAATTCTTTGTCTACGCAAAAGCGTGAAAAGCAGCTTAGAAGCATCAATTTACTTAAACGCAAGAAACCTTCAGACATGGATAATGCAGTCAAAATGGCACTTAGTAAACCATCTAAACCACAATTGGGGATATCTGTGGTAGACATTGGACCTCCTGCTGATTGGGTAAAAATCAACGTTCAAAAAACTAAAGATTGTTTTGAGGTCTATGCTTTAGTTCCTGGCCTTCTTCGGGAAGAGGTGCGTGTTCAATCAGACCCAGCTGGACGCTTGGTCATTAGTGGTGAGCCCGAGCATTCTGACAATCCATGGGGGGTGACACCATTCAAGAAGGTTGTCAGCTTGCCTTCAAGAATTGATACTCAACAGACGTCAGCTGTGGTGACCTTGCATGGACAGTTGTTTGTTCGAGTTCCATTTGAGCAATCAGAATAG 1560 0.4205 MGDAKESEEAGQNVPFAEAQVQPEGLAAPVSVEDTLNYVENWKVEVDAPMEDKNVKPEANSECIPQQNVVNSKNTLHSVPAIDSVQALNKTEGEYASVVKTKAEEVPQCDKGIENDANVCQNNADVADTAVEVKPKSFEVTDSKTHNNDDSNSINSGHHEPNTPEAVPTDIKPEIKSGLDIENKINEKQVAVAHVDNGNSISKNLCFLDPDYSYDGNESGTEEEQSAFMKELENFFRERSMEFKPPKFYKEGLNCLKLWRSVNRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWSFRVFYEKALLDYERHKTKGGELNLPITSHSEPMNFENQCVQGSASGRARRDAAARAMQGWHSQRLLSNGEVGDPIIKDRNSLSTQKREKQLRSINLLKRKKPSDMDNAVKMALSKPSKPQLGISVVDIGPPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHSDNPWGVTPFKKVVSLPSRIDTQQTSAVVTLHGQLFVRVPFEQSE 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00977 519 CDD ACD_sHsps-like 434 514 - -
Cca11g00977 519 Pfam ARID/BRIGHT DNA binding domain 225 309 IPR001606 GO:0003677
Cca11g00977 519 MobiDBLite consensus disorder prediction 138 170 - -
Cca11g00977 519 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 55 518 IPR045147 GO:0006357
Cca11g00977 519 Pfam Hsp20/alpha crystallin family 436 518 IPR002068 -
Cca11g00977 519 SUPERFAMILY ARID-like 217 326 IPR036431 GO:0003677
Cca11g00977 519 SUPERFAMILY HSP20-like chaperones 428 515 IPR008978 -
Cca11g00977 519 Gene3D - 422 519 IPR008978 -
Cca11g00977 519 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 419 519 IPR002068 -
Cca11g00977 519 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 55 518 - -
Cca11g00977 519 SMART ARID_2 219 309 - -
Cca11g00977 519 MobiDBLite consensus disorder prediction 1 26 - -
Cca11g00977 519 CDD ARID 224 309 - -
Cca11g00977 519 Gene3D - 222 320 IPR036431 GO:0003677
Cca11g00977 519 ProSiteProfiles ARID domain profile. 222 313 IPR001606 GO:0003677
Cca11g00977 519 SMART bright_3 223 314 IPR001606 GO:0003677
Cca11g00977 519 MobiDBLite consensus disorder prediction 147 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00977 Cca-Chr11 21059015 21068500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00977 217 517 ARID Transcription Factor Family AT1G76510 63.036 1.02e-129 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Cca11g00977 HSP20 3.3e-06 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00977 - - vun:114176226 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00977 11 21059015 21068500 Cca11g00977 11 21059015 21068500 ECH