Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00963 ATGATGCCTGAAATCATTGATTTGACAAACTCCTCTCCATCACCACCCAGGTCATCTAATGCATCCATAGTCCTTGGTTCTACTAGACAAGTAAAATTTGAGAATGCTCATTTTCCCTTAATTGTTGGCACAAATCCCAACTTGAGTCAAGCAAGCCAACAACAAATTGTTACTCCTTGGCCAACTTTTGACCAAACCAATGTGCCTTCTCAAATTGTTACTAGTTTCCAACCTAGCATGCAAGGTGGGATTGTTACAACTGAACCAAACAAATACTTGGTTCCTCATGGAGCTATGCTGAATGAGCCTTGGACCCAAAGAGATCATGAGTTATTTGTAATGGGGCTAATTAGATATGGAAAAGGGCGTTGGACAAAAATTGCTAAAGATTTTTTGCGCAATAAGACCCCTCAACAAGTTCAAAGCTATGCAGCTAACTTCATGCAACAGGTACCACCACCATTCCCACATGAATTTGGGAGAAGGACCCCCACTTACTCCTCACCTCACTTCATGTCCAATGATTGGAACTTGATTATTGATCCATCTATCCCAAACTCTGTGCCTGTGGTTGTTAACAACCGATCTCAACAACTTTTCACCCTTGTCCCAATGACTGATCGCTTTCTTTTGGATCCACCAAATGGAGAAGCTAGcaccagcaccaataataacaccaacaccatcaAGTATGGGTTTCAGATGCATACAGGAGATGTCGTTGCAAGCACTTCCATGAATGTTACTCCAAGTGCTAATGAAGACATTGATTTGGAGTTGCGCTTAGGTCCAAGACATTGA 801 0.402 MMPEIIDLTNSSPSPPRSSNASIVLGSTRQVKFENAHFPLIVGTNPNLSQASQQQIVTPWPTFDQTNVPSQIVTSFQPSMQGGIVTTEPNKYLVPHGAMLNEPWTQRDHELFVMGLIRYGKGRWTKIAKDFLRNKTPQQVQSYAANFMQQVPPPFPHEFGRRTPTYSSPHFMSNDWNLIIDPSIPNSVPVVVNNRSQQLFTLVPMTDRFLLDPPNGEASTSTNNNTNTIKYGFQMHTGDVVASTSMNVTPSANEDIDLELRLGPRH 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00963 266 SMART sant 100 150 IPR001005 -
Cca11g00963 266 SUPERFAMILY Homeodomain-like 103 151 IPR009057 -
Cca11g00963 266 ProSiteProfiles SANT domain profile. 99 152 IPR017884 -
Cca11g00963 266 PANTHER MYB-LIKE DNA-BINDING DOMAIN PROTEIN 87 263 - -
Cca11g00963 266 Pfam Myb-like DNA-binding domain 103 146 IPR001005 -
Cca11g00963 266 MobiDBLite consensus disorder prediction 7 22 - -
Cca11g00963 266 Gene3D - 102 152 - -
Cca11g00963 266 ProSiteProfiles Myb-like domain profile. 103 148 IPR001005 -
Cca11g00963 266 MobiDBLite consensus disorder prediction 1 22 - -
Cca11g00963 266 CDD SANT 103 148 IPR001005 -
Cca11g00963 266 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 87 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00963 Cca-Chr11 20522329 20523464 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca11g00963 Myb_DNA-binding 1.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00963 - - gmx:102659381 226.868