Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00950 ATGACTCGCGCCCTCAGACTCCTCCAATCCGCCGCCGCGACACCGCCGGACTCCGCCGTCGCCGCCGAGTCCGACTTCGTCGTCATCCTCGCCGCCCTCCTCTGCGCCCTCGTCTGCGTCGTCGGCCTCATCGCCATCGCGCGCTGCGCCTGGCTCCGCCGGGGACCCGCTGCCCGCGCCGGCGCCGCTTCCACGGCGACGGCGCAGGCCAACAAGGGCCTCAAAAAGAAGGTAGTGAACTCGCTGCCGAAATTCACCTACGGCGGCGACGGCGCCGGCGATCGGTGCAAGTGGTCGGAGTGTGCGATTTGCCTGACGGAGTTCGCCGGCGGCGACGAGGTGCGCGTGCTGCCGCAGTGCGGGCACGCGTTCCACGTGGCGTGCGTGGACACGTGGCTGGCGTCGCACTCCTCGTGCCCGTCGTGCCGCGCGCCCTTCGCCGTCGCAAGATGCCAGAAGTGCGGCCACTTCCCGGCGGTTGCCGCTGCGGAACTGGAGTCGAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGACAATGCCGATGGCGCCGCCGCGAGTGCTAATCgtgggggatgctgttgagaccccggcggcctcgggctcggtgatgcccgaggcaggtgtccctgttgttgagcaggggatgtcggctgccgcctctgttgctgccgaggttcaggcggctgagaagcgcctctgcgatgaggtcgtgcttggcggtaaagaggaggaggtcaccgccttgaaagtggagctggcgaagcaggaggcggagagagcagtgctggagaagaagctggaggaaaccgaacgagctatcatggttgaacacaagcggagtttcctcaaggcggctcgccaggcgaggcttcttgccccagggttcgacttctctgccatgcacgtggagaaagtggtccgctttgggaagctggtaaaggaggatgacctcgaggacaactccagtgagaatgcctctgcgtag 1050 0.3638 MTRALRLLQSAAATPPDSAVAAESDFVVILAALLCALVCVVGLIAIARCAWLRRGPAARAGAASTATAQANKGLKKKVVNSLPKFTYGGDGAGDRCKWSECAICLTEFAGGDEVRVLPQCGHAFHVACVDTWLASHSSCPSCRAPFAVARCQKCGHFPAVAAAELESKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTMPMAPPRVLIVGDAVETPAASGSVMPEAGVPVVEQGMSAAASVAAEVQAAEKRLCDEVVLGGKEEEVTALKVELAKQEAERAVLEKKLEETERAIMVEHKRSFLKAARQARLLAPGFDFSAMHVEKVVRFGKLVKEDDLEDNSSENASA 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00950 349 Coils Coil 160 168 - -
Cca11g00950 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 148 IPR013083 -
Cca11g00950 349 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 172 - -
Cca11g00950 349 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 172 - -
Cca11g00950 349 CDD RING-H2_PA-TM-RING 100 143 - -
Cca11g00950 349 SMART ring_2 101 142 IPR001841 -
Cca11g00950 349 Coils Coil 260 294 - -
Cca11g00950 349 Pfam Ring finger domain 100 143 IPR001841 -
Cca11g00950 349 SMART FANCL_C_2 97 151 - -
Cca11g00950 349 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Cca11g00950 349 SUPERFAMILY RING/U-box 95 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00950 Cca-Chr11 20382036 20389764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00950 1 154 C3H Transcription Factor Family AT1G76410 61.006 4.92e-58 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00950 - - gmx:100813341 250.751