Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00948 ATGGAACCACAACGCTTTTACTTTGATGTGTCGCGGTGGAACAATGAGCACATCACACTTATGCCAGGTGATATTTTCAAATTCAACATTAGGGTTTTTTATTACTCTTCCAACACAGAAAGTATAAACCCTAGGCTTTTTCAATACCACCCTCCTTCTCATTCCATTCCATGCCATAATTTCTTTCAAGAGGGTAAAGATTTCTTAATCTCACTGTTGTCAAGCATACACATCTTCATGGAAAATCCTGATCAAATAACAGAAATGATTGTATCTTCTGTTGGACGATTGTTCCAGGTTGATGATGAAGTTGTTTGGCTTCTTCATTCTTCAGAATCTCAACAACGAGAGATTCCTATAAAGATTGGAATTTTTGTAATTGATGATCACCTTCAACAAGCAATGGAAGAGCCTTTGCAGTATCCTAAAATGGTTCCAGCTTCTAAAGAAGCCATACAAATGTTGTTGAAGAAATATACAATTATGACACAGGGTAGTGAGTGTTGTTCTATTTGTTTGGAAGAAATGGTGATCAATGCTGAGTGCTACACCATGCCATGTCATCATTATTTTCATCAACAATGTATTGTGTCTTGGTTAGAAACCAGTCATGTGTGTCCCTTGTGTCGCTTTCCCTTGCCAACCATCAAAAACTAG 657 0.3744 MEPQRFYFDVSRWNNEHITLMPGDIFKFNIRVFYYSSNTESINPRLFQYHPPSHSIPCHNFFQEGKDFLISLLSSIHIFMENPDQITEMIVSSVGRLFQVDDEVVWLLHSSESQQREIPIKIGIFVIDDHLQQAMEEPLQYPKMVPASKEAIQMLLKKYTIMTQGSECCSICLEEMVINAECYTMPCHHYFHQQCIVSWLETSHVCPLCRFPLPTIKN 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00948 218 PANTHER F6A14.12 PROTEIN-RELATED 127 215 - -
Cca11g00948 218 ProSiteProfiles Zinc finger RING-type profile. 169 210 IPR001841 -
Cca11g00948 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 216 IPR013083 -
Cca11g00948 218 SMART ring_2 169 209 IPR001841 -
Cca11g00948 218 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 127 215 - -
Cca11g00948 218 Pfam Ring finger domain 169 210 IPR001841 -
Cca11g00948 218 SUPERFAMILY RING/U-box 126 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00948 Cca-Chr11 20262429 20263085 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00948 129 214 C3H Transcription Factor Family AT1G18760 38.889 6.29e-18 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00948 - - ccaj:109804929 214.542