Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00946 ATGAACTTTCCTCTCTTCACCATTTCCACCCTTCTTCTCTCCCTAGCAATCGCCATTTCCTTCGCCCCAACCTCATCAACGCCTCACACCAAACACCAAAATGAAGAAAACCACTTCCACGCTCGACTTCATCCGCGCTCTTCCCGCTCCCTTCTCTCCATTCCACCTGAGGATGCAACTACGGCACTGGTTGCGACCCCGGATGGGACTATGCATTTGGTGGAAACGTCGGAGAGTGGTTCCATGAGGGCCATATGGTCGTTTTCGACAGGATTGCCAATCTACCAATCTTATCGAGCTCCGATAAATAACGATAATGGTAAAGAAAATGCGTCTGCAGCAATGGGTGGGTTCATGGAATGTGGGGATGACTGGTCATTGTACATGCACGACAAATTCTTTGGTAAAATGAGAATATCAGAATCTATTGCAGAATTTGTAGCTCGTACACCTACATTTTCAGATGATGGATCCGTAACACTTGGATCCAAAAGAAGCACTTTGTTTGAAGTTGATGCTAAAACTGGATCAATCATTCAAACCCATTGGATGTCTGATTTTGATAATGCTTCTGCACCTTGGAGTGATGGCAGGCAGGGTGTTGATCCTGTGAAGGTAAATTCATCACAGGTGCTGCTTAAGATTTTTAGAACAGATTATTCTCTTCAATCTGTTGGTCCAAGCTCAGGAAAAGTTTTGTGGACTTTGACAGTAGCTGAATTTGAGGCTGTATTATTATGCCAACATACCTCTTTTGGTGTAGAGGACGAGTATGCTTCTAACAATGGCCTCAACTTTGCAATGTCATACCCATGTCAAGAGAAACAACAAGTCTTCCGTCTGAAGAAGAATTTTCTGTTTGAATCTTCACAAACTGAAAGTCAACTTGGGGTTTATCATGAAAATGATATGCTCTCAATGCCTAACTCAAATCTAATGCTTCCATCGCAGCCAAATATTGATAGATCATTCAATGGTCATGATGATTTCATGATGCTTCCTCAGCCTTCTGTGGAGGTTACTACACCAGGGGAAGATTATCTGAACATGACAAGGGAATGGCCAACTCCATTACCTCTTATACTTTTCACAGTCTTAGTTCTGGCCTTTTCACTCATCTATCCTCTAGTGATTAAGAATGAAGATATACTGAAGGACCAAAACAGTGAGTCTGAATTAAAGAGTTCACCTGCTAAGAAAAAGAAAACTCGTAAGTCAGGGAAGAAAAATGTCACTATCGATGAAAGGGAAAAGCACCCTTATTCAGAGAACAATGATGTACCGACACAAAAGGATACTGATAGTGAAGTATGGCAGCTATTCAATCAAGTTGATGAAAGTGTTCATGGACGAAGAATTGGTAAGTTACTTGTTTCAAATAAAGAGATTGCCAAGGGAAGCAATGGTACCATTGTCCTTGAGGGAATATATGAAGGCCGAGCAGTTGCTGTGAAACGTCTTGTCAAGGGTCATCATGATGTAGCTTTTAAGGAAATCCAAAGCCTCATTATGTCTGATCATCATCCAAACATTGTCCGATGGCATGGGATGGAGTCTGATAGTGATTTTTTTTACCTTGCTCTGGAACGTTGTACATGCAACTTAGATGATTTGATTCAAATTCATTCAGATATATCAGAAGACTCTGAGTATAGGAAAGAGAAGGGTTTCAAATGTTTGATAAAGTCCCAAATGGAGTCAGGGAAGGATAATGCGCAATGTCTTTGGAAGAAAAACGGTTATCCATCTCCTCATTTATTGAATCTGATGAGGGACATTGTTTCTGGGATCGATCATTTGCATAAACTGGGAATAGTACACCGAGATTTGAAACCACAAAATGTTCTAATAAGTAAAGAAAGATCCTTATGTGCAAAGCTTTCTGATATGGGGATCAGCAAACACCTTCTTGAAAATATGTCTTCTTTGGGTAATAATGCTACTGGTTGTGGCAGTTCAGGTTGGCAAGCACCAGAACAGCTTGTTAAGGGACGCCAAACACGGGCAGTAGATATATTTAGTTTAGGTTGTGTCCTCTTTTATTGCATAACTGGGGGAAGACATCCATTTGGAGAACGTATTGAACGGGATATCAATATTTTGAATAGTCAAAAAGATCTTTCCTTGGTGGAGTTTATTCCTGAAGCCACGGATCTTATTAGTAGCTTATTAAACCATAACCCTAATCTAAGGCCAAAGGCGAGTGATGTATTGTATCATCCTTTTTTCTGGAGTTCCGAGATGAGACTTTCTTTTCTACGTGACACCAGTGACAGGGTAGAACTGGAAAATAGAGAGACCGATTCTGATCTTTTGGTGGCATTAGAATGCATTGGCACTGTAGCCATGGGTGGAAAGTGGGATGAAATGATGGAACAGGCCTTCATTGCTAACATCGGTCATTACCGGCGGTACAAGTTTAACAGTGTTCGGGACTTGTTGCGAGTTATGAGAAACAAACTAAATCACTATAGAGAATTGCCTCGAGAAATTCAGGAACTCGTAGGACCTGTTCCCGAAGGATTCTGCAACTACTTTGCTGTTCGATACCCTAAACTCTTGATTGAAGTGTATAAAGTTATACTCAAATATTGCAAGGAGGAAGAATGTTTCCAAAAATATTTTTAA 2628 0.4072 MNFPLFTISTLLLSLAIAISFAPTSSTPHTKHQNEENHFHARLHPRSSRSLLSIPPEDATTALVATPDGTMHLVETSESGSMRAIWSFSTGLPIYQSYRAPINNDNGKENASAAMGGFMECGDDWSLYMHDKFFGKMRISESIAEFVARTPTFSDDGSVTLGSKRSTLFEVDAKTGSIIQTHWMSDFDNASAPWSDGRQGVDPVKVNSSQVLLKIFRTDYSLQSVGPSSGKVLWTLTVAEFEAVLLCQHTSFGVEDEYASNNGLNFAMSYPCQEKQQVFRLKKNFLFESSQTESQLGVYHENDMLSMPNSNLMLPSQPNIDRSFNGHDDFMMLPQPSVEVTTPGEDYLNMTREWPTPLPLILFTVLVLAFSLIYPLVIKNEDILKDQNSESELKSSPAKKKKTRKSGKKNVTIDEREKHPYSENNDVPTQKDTDSEVWQLFNQVDESVHGRRIGKLLVSNKEIAKGSNGTIVLEGIYEGRAVAVKRLVKGHHDVAFKEIQSLIMSDHHPNIVRWHGMESDSDFFYLALERCTCNLDDLIQIHSDISEDSEYRKEKGFKCLIKSQMESGKDNAQCLWKKNGYPSPHLLNLMRDIVSGIDHLHKLGIVHRDLKPQNVLISKERSLCAKLSDMGISKHLLENMSSLGNNATGCGSSGWQAPEQLVKGRQTRAVDIFSLGCVLFYCITGGRHPFGERIERDINILNSQKDLSLVEFIPEATDLISSLLNHNPNLRPKASDVLYHPFFWSSEMRLSFLRDTSDRVELENRETDSDLLVALECIGTVAMGGKWDEMMEQAFIANIGHYRRYKFNSVRDLLRVMRNKLNHYRELPREIQELVGPVPEGFCNYFAVRYPKLLIEVYKVILKYCKEEECFQKYF 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00946 875 Gene3D Phosphorylase Kinase; domain 1 443 529 - -
Cca11g00946 875 MobiDBLite consensus disorder prediction 388 432 - -
Cca11g00946 875 CDD RNase_Ire1 747 875 - -
Cca11g00946 875 Gene3D - 33 253 IPR015943 GO:0005515
Cca11g00946 875 Gene3D KEN domain 750 875 IPR038357 -
Cca11g00946 875 SMART serkin_6 457 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00946 875 SUPERFAMILY Protein kinase-like (PK-like) 460 758 IPR011009 -
Cca11g00946 875 ProSiteProfiles Protein kinase domain profile. 457 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00946 875 SMART PGNneu 808 862 - -
Cca11g00946 875 ProSiteProfiles KEN domain profile. 746 875 IPR010513 GO:0004540|GO:0006397
Cca11g00946 875 PANTHER SERINE/THREONINE KINASE DOMAIN PROTEIN 8 875 - -
Cca11g00946 875 MobiDBLite consensus disorder prediction 408 425 - -
Cca11g00946 875 ProSitePatterns Serine/Threonine protein kinases active-site signature. 605 617 IPR008271 GO:0004672|GO:0006468
Cca11g00946 875 Pfam Ribonuclease 2-5A 749 875 IPR010513 GO:0004540|GO:0006397
Cca11g00946 875 PANTHER IRE1-RELATED 8 875 IPR045133 GO:0004521|GO:0004674|GO:0030968
Cca11g00946 875 Pfam Protein kinase domain 460 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00946 875 Gene3D Transferase(Phosphotransferase) domain 1 563 749 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00946 Cca-Chr11 20096721 20106912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00946 483 742 MAP Kinase Kinase Kinase AT3G06030 26.394 2.59e-20 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Cca11g00946 Pkinase 3.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00946 K08852 - gmx:100788389 1352.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00946 11 20096721 20106912 Cca11g00946 11 20096721 20106912 ECH
Cca06g01166 06 26049708 26057086 Cca11g00946 11 20096721 20106912 ECH