Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00944 ATGATTGGAGTATGGCTTGTGGTAATGATGGTTCTGTCCAAAGGGTTATCTTCAACTGGGGTTGTGTTGAATAATTCCACAATACCTGCTTTTGTAAATATTGGGGTTCTCTATTCTTTCAATACCAGTGTCGGTAAAATGGTGAAAACTGCTGTACAAGCTGCAGTTAATGATGTAAATTCTGATCCATCTATTCTTGGTAAAACTAACTTGAAGGTCTCACTGCAAGAAGATACCAAATACAGAGGTTTCTTGAGCATTGCTGAGGCCTTGCAGCTCATGGCGACACAAACCGTGGCTATAATAGGCCCCCAGACCTCTACAACAGCTCATGTTATATCTCATATAGCGAATGAGCTCCAAGTTCCTCTGCTATCATTTACAGCTACTGACCCTACCCTTTCTTCACTTCAATTCCCATTCTTTATTAGAACTTCTTTCAGTGACATTTATCAAATGACTGCAATAGCAGACCTTGTTAACTTCTTTGAATGGAGAGAGGTTATTGCAGTTTATGGTGATGATGACCATGGGAGGAATGGAATTGGTGCATTAGGGGATAAGCTTGCCGAGCGGCGTTGCAAGATCTCATTTAAAGCGCCTATGACTCCTGAGGCAACTAGGGAGGAGATTACTGATGTGCTAGTTCAGGTGGCCTTGGCAGAATCACGGGTTATAGTTCTTCACACAAGTACTGCTTGGGGTCCAAAAGTGTTAAGTGTGGCAAAGTCTTTGGGGATGATGGAAAATGGCTATGTCTGGATAACAACAACTTTTCTGTCTACTTGGCTGGATATAGGTACTCCCCTATCTTCGGAGGCAACGGATGATATGCAAGGAGTCATTACACTTCGAATGTACATACCAGATTCAAAGCGGAAAAGATGGTTTGTTTCTAGGTGGAATAACTTGACTACTGGAAAGGCTGCTAATGGTTCCCTTGGTTTGAGTACATATGGTATCTTTGCATATGATACAGTTTATGCTCTTGCTCATGCACTTGATGCATTTTTCAAACAAGGAAACCAAATTACGTTTTCACATGATCCAAAGCTATCTCAACATCGTGCAGACAATCTTCATCTTGATGCTGTGAAAATCTTCAATGAAGGAAATCTGTTGCGTAGGAATATTTATGAGGTTAACATGACTGGTGTATCAGGTCCATTCAAGTATACATCAGATGGAAATCTTGTTAATCCTGCATATGAAATCATCAATGTGATTGGAACAGGGACTCGGAGGATTGGTTATTGGTCTAATCACACTGGATTGTCGATTGTTCCTCCAGAAGCACTTTATTCAAAACCACCTAATCGATCCAGTGCAAGCCAAAAGCTACTCCCTGTGTTTTGGCCAGGAGAAACAACGCAGAAGCCCCGTGGTTGGGTTTTTCCAAACAATGGAAGGATGTTAAAAATTGGAGTGCCAAAAAGGGTTAGTTACCGAGAATTTGTCTCTCAAGTACAAGGCACTGACATGTTCAAGGGATTCTGCATTGATGTATTTCTTTCTGCAGTGAACTTGTTGCCCTATGCTGTTCCTTATAAATTTGTTTCATATGGGGATGGTGACAGCAATCCTAGTAACACGGAGCTTGTCCGTCTTATCACAGCGGGTGTCTTTGATGCTGCTGTTGGTGACATTACAATTACTACGGAAAGAACAAAGATGGTGGATTTTACTCAGCCATATATTGAGTCTGGTCTAGTGGTAGTAGCATCAGTTAAGAAGACGGATTCCAATGCTTGGGCGTTTTTGACGCCATTTACACCAATGATGTGGACTGTCACAGCTGTCTTTTTCCTACTAGTTGGTGCTGTTGTTTGGATTTTAGAGCATAGACTGAATGATGATTTTAGGGGACCTCCCAAACAACAAATGGTCACAATTTTGTGGTTTAGCTTTTCAACCATGTTCTTTGCTCACAGGGAAAATACAGTGAGCACTCTTGGTCGCTTTGTGCTGCTTATATGGTTATTTGTAGTTCTTATAATTAACTCAAGTTACACGGCTAGCCTGACATCAATCCTCACAGTGCAACAACTTTCTTCACCTGTTAAAGGCATTGAAAGTTTAATAAATAGCAAAGAGCCTGTCGGCTACTTGCAGGGTTCATTTACTAGAACTTATTTAATTGAGGAAATGGGTATTGATGAATCCAGACTAGTTCCTCTAAAAACACCAGAAGAAACTACAAAAGCACTGGAAAAAGGTCCCCAGAAAGGTGGTGTTGCAGCATATGTTGATGAGCGTGCTTACATAGAACTCTTCCTCTCAAGTCGGTGTGATTTTAGCGTCGTAGGTCAAGAGTTCACCAGAAATGGTTGGGGATTTGCCTTTCCGCGAGACTCGCCATTGGCAGTTGACCTTTCAACTGCCATATTGGAGTTGGCAGAGAATGGAGACTTACAAAGGATCCATGACAAATGGCTTCTGAGCAGTGCTTGCCTCTCACAAGGTGCAAAACTTGAAGTGGACAGACTCAAGCTGAGAAGCTTTTGGGGCCTCTATCTGGTGTGTGGATTGGCATGTGTTCTTGCTCTCCTCATATATCTTGTTCAGACCATGAGGCAGTACTTCAAGCATGGCCCGGAGGAACTTGAGTCTTCTGCTTCCGGCCAGGCCTCAGGACCGTCGCGGCTGCGTACATTCCTTTCCTTCGTAGATGAAAAGGAAGAGATAGCTAAGGGCCGCTCCAAGAGAAAGAAAATGGAGGGGATCTCATACAGAAGCGCAAGTGAGGTTGGTTCATCCATCACCTTCAACAAAGGATATTCTCAGGCATCATCAAACAGAATTGATTCACTTCATGAAATCTAA 2823 0.4247 MIGVWLVVMMVLSKGLSSTGVVLNNSTIPAFVNIGVLYSFNTSVGKMVKTAVQAAVNDVNSDPSILGKTNLKVSLQEDTKYRGFLSIAEALQLMATQTVAIIGPQTSTTAHVISHIANELQVPLLSFTATDPTLSSLQFPFFIRTSFSDIYQMTAIADLVNFFEWREVIAVYGDDDHGRNGIGALGDKLAERRCKISFKAPMTPEATREEITDVLVQVALAESRVIVLHTSTAWGPKVLSVAKSLGMMENGYVWITTTFLSTWLDIGTPLSSEATDDMQGVITLRMYIPDSKRKRWFVSRWNNLTTGKAANGSLGLSTYGIFAYDTVYALAHALDAFFKQGNQITFSHDPKLSQHRADNLHLDAVKIFNEGNLLRRNIYEVNMTGVSGPFKYTSDGNLVNPAYEIINVIGTGTRRIGYWSNHTGLSIVPPEALYSKPPNRSSASQKLLPVFWPGETTQKPRGWVFPNNGRMLKIGVPKRVSYREFVSQVQGTDMFKGFCIDVFLSAVNLLPYAVPYKFVSYGDGDSNPSNTELVRLITAGVFDAAVGDITITTERTKMVDFTQPYIESGLVVVASVKKTDSNAWAFLTPFTPMMWTVTAVFFLLVGAVVWILEHRLNDDFRGPPKQQMVTILWFSFSTMFFAHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSPVKGIESLINSKEPVGYLQGSFTRTYLIEEMGIDESRLVPLKTPEETTKALEKGPQKGGVAAYVDERAYIELFLSSRCDFSVVGQEFTRNGWGFAFPRDSPLAVDLSTAILELAENGDLQRIHDKWLLSSACLSQGAKLEVDRLKLRSFWGLYLVCGLACVLALLIYLVQTMRQYFKHGPEELESSASGQASGPSRLRTFLSFVDEKEEIAKGRSKRKKMEGISYRSASEVGSSITFNKGYSQASSNRIDSLHEI 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00944 940 CDD GluR_Plant 470 812 - -
Cca11g00944 940 Gene3D - 50 400 - -
Cca11g00944 940 Gene3D - 471 582 - -
Cca11g00944 940 PANTHER GLUTAMATE RECEPTOR 10 932 - -
Cca11g00944 940 SUPERFAMILY Periplasmic binding protein-like I 29 464 IPR028082 -
Cca11g00944 940 Pfam Bacterial extracellular solute-binding proteins, family 3 529 812 IPR001638 -
Cca11g00944 940 Gene3D - 782 812 - -
Cca11g00944 940 Gene3D - 583 708 - -
Cca11g00944 940 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Cca11g00944 940 SMART GluR_14 473 814 IPR001320 GO:0015276|GO:0016020
Cca11g00944 940 Pfam Receptor family ligand binding region 48 410 IPR001828 -
Cca11g00944 940 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 10 932 - -
Cca11g00944 940 Gene3D - 148 425 - -
Cca11g00944 940 SUPERFAMILY Periplasmic binding protein-like II 447 814 - -
Cca11g00944 940 Pfam Ligand-gated ion channel 813 845 IPR001320 GO:0015276|GO:0016020
Cca11g00944 940 Gene3D - 741 781 - -
Cca11g00944 940 PIRSF IGluLR_plant 1 936 IPR017103 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00944 Cca-Chr11 20025010 20029518 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00944 5 916 Ion Channels AT3G51480 59.146 0.0 1150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00944 K05387 - gmx:100788917 1728.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00944 11 20025010 20029518 Cca11g00944 11 20025010 20029518 ECH
Cca06g01168 06 26066531 26070608 Cca11g00944 11 20025010 20029518 ECH