Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00942 ATGAACAAAGTTTGGTTCCTTGTCCTTGTGATCCTCTACGGTGGCTTTTCCTCAAAAGGAAGCAGCAATGTTTCTACAAGACCAAGTTCCGTTAACATTGGGGCAATTTTATCTTTCAACTCTACAATTGGAAGAGTGGCTAAAGTTGCCATACAAGCTGCAGTGGATGATATAAACTCCGACGCCATGATTCTGAATGGAACTAAGCTTAATATTTCAATACTGGACACCAAATTATCCACTGGATTCCTAGGAATCATGGCTTCATTAAGATTAATGGAGAATGATACTGTGGCCATAATTGGTCCACAGTTCTCGGTCATGGCTCATGTGATTTCACATATTGCAAATGAGATTCAAGTGCCTCTACTTTCATTTGCAGCAACAGACCCTACACTGACTTCACTGCAGTTCCCATATTTTGTTAGAACAACACATAGTGATTTGTATCAGATGACTGCTGTGGCAGAAATTGTTGATCACTTTCAATGGAGAGATGTTATAGCCATATACGTTGATGATGATCATGGAAGAAATGGGGTAGCTGCCTTAGGGGATAAGCTAACAGAGAAACGTTGTAAAATATCATATAAAGTACCCTTTAGGCCAAATAACATAACCCGAGAAGAAATAAACAGTGAATTAGTTAAGGTAGCTTTAATAGAATCACGGGTAATAATTCTTCACATATACTCTACTTTTGGTCTAGAATTACTTCATGTGGCTCAATCACTTGGCATGATGACAAGTGGTTATGTGTGGATAGCCACAGATTGGCTTTCTACAGTGCTAGATTCAGATCCATCATTGTCCACTTCTCCAGCCATGAATGACATCCAAGGTGTTATCACCTTGCGCATTCATACACCAGATTCAAACATCAAAAAAACATTTATTTCTAGGTGGAAAAAACTGACCCAAAAAGAAGATCCTAATCATGATCCTTTTGGGTTAAATATCTTCGGTTTATACGCATATGACACTGTCTGGGTACTTGCTCATGCACTTGACGCAATTTTAAAGGATGGAGGAAATTTATCATTTTCAAATGATTCAAGTTCAAACATGTTAAAGGGGGACACCCTTCTCCTAGATGCTATGGGGGTGTTTGTTAATGGTAGCATGTTGCTTAAAAAAATTTTAGAGGTCAACACAACTGGTTTAACAGGCCAAATGTTGTTTGACTCAAATGGAAATTTAATGCATCCAGCATATGAAATAATTAATGTGATAGGAACTGGAATTAGGAGGATTGGTTATTGGTCTGAAACCTCTGGTCTCCACACTGGTGAAGCTCCTAATCATTCCAATTCTAGTGAAGGACTATATGGTGTCATTTGGCCTGGTCAAACAACTCAAACCCCACGTGGTTGGACTTTTGGCACCAATGGAAGACAATTGAGAATTGGGGTGCCACTTGAAGTTAATTTTCGTGAGTTTGTGTCGAGAATTGAGGGAACTGACATGTTTGGTGGTTATTGCATAGATGTGTTTACTGCTGCTCTAAACTTGTTGCCTTATCCGGTTCCATTCAAGTTTATTCCATATGGTAATGGTAAAATCAACCCGTCAAGTTTAGAACTTCTTCATTTGATGACAAATGGTGCCTTTGATGCTGTGGTGGGGGACATTACCATTACTACAAACCGAGCTAAGATAGTGGATTTTACACAGCCATATGTTGAGTCTGGGCTAGTTGTTGTGGCACCTATCAAGAAGTTGAAATCTAGTGCTTGGGCTTTCCTCACACCATTCGCTCCAATCATGTGGTTTGTGACAGGAATGTTTTTCTTGGTGGTGGGAGCTGTGGTGTGGATTTTAGAGCGTCGCATAAATGATGACTTTAGAGGCCCTGCCAGAAGACAATTAGTCACCATTATCTGGTTTAGCTTCTCAACCCTATATTTTGCACAGAGAGAGAAAACTGTGAGCACCCTTGGTCGTTTTGTGCTTATCATATGGCTGTTTGTGGTATTGATACTGAACTCAAGCTATACTGCAAGCTTGACCTCCATACTAACCGTGGAACAGCTCTCTTCCCCAGTTAAGGGAATTGAAAGCTTAGTAACAAGCAACGAACGCATTGGTTTCCAAAGGGATGCGTTTTCTGAAAATTATCTGACTGATGAGCTAAACATACACAAGTCAAGGCTTGTTCCTCTAACCTCCATATCAGAGTATGAAAAGGCCTTGAAGGATGGACCAGCTAGTGGTGGTGTTGCTGCAATAATAGATGAGCGTCCATACATGGAACTCTTCCTATCAACTAGATGTGAATTTAGTATTATTGGTCGAGAGTTCACTAAGAACGGATGGGGATTTGCCTTCCCAAAGGACTCTCCCTTAGCAATTGACATGTCCACTGCGATCCTAAAACTATCAGAGAATGGTGACCTTCAGAGAATTCACGACAAATGGCTAACAAGAAGAGCTTGCAGCTCACAGGGTGCAAAAGAAAGCATTGACAGACTTGAGTTAAAAAGCTTTTGGGGTCTGTTCCTACTGAGTGGTGCAGCATGCTTCATTGCTCTCCTTTGCTATGTTACAAGAATGGCCTACCGTTTTAGCAGACACTCAAATACTAACCTTGAGGGCTCATCAAACTCTACTCGTCTTCGATCATTTATTTCCTATGTCAATGAAAAAGAAGGGGAAGACAAAATATGA 2667 0.4046 MNKVWFLVLVILYGGFSSKGSSNVSTRPSSVNIGAILSFNSTIGRVAKVAIQAAVDDINSDAMILNGTKLNISILDTKLSTGFLGIMASLRLMENDTVAIIGPQFSVMAHVISHIANEIQVPLLSFAATDPTLTSLQFPYFVRTTHSDLYQMTAVAEIVDHFQWRDVIAIYVDDDHGRNGVAALGDKLTEKRCKISYKVPFRPNNITREEINSELVKVALIESRVIILHIYSTFGLELLHVAQSLGMMTSGYVWIATDWLSTVLDSDPSLSTSPAMNDIQGVITLRIHTPDSNIKKTFISRWKKLTQKEDPNHDPFGLNIFGLYAYDTVWVLAHALDAILKDGGNLSFSNDSSSNMLKGDTLLLDAMGVFVNGSMLLKKILEVNTTGLTGQMLFDSNGNLMHPAYEIINVIGTGIRRIGYWSETSGLHTGEAPNHSNSSEGLYGVIWPGQTTQTPRGWTFGTNGRQLRIGVPLEVNFREFVSRIEGTDMFGGYCIDVFTAALNLLPYPVPFKFIPYGNGKINPSSLELLHLMTNGAFDAVVGDITITTNRAKIVDFTQPYVESGLVVVAPIKKLKSSAWAFLTPFAPIMWFVTGMFFLVVGAVVWILERRINDDFRGPARRQLVTIIWFSFSTLYFAQREKTVSTLGRFVLIIWLFVVLILNSSYTASLTSILTVEQLSSPVKGIESLVTSNERIGFQRDAFSENYLTDELNIHKSRLVPLTSISEYEKALKDGPASGGVAAIIDERPYMELFLSTRCEFSIIGREFTKNGWGFAFPKDSPLAIDMSTAILKLSENGDLQRIHDKWLTRRACSSQGAKESIDRLELKSFWGLFLLSGAACFIALLCYVTRMAYRFSRHSNTNLEGSSNSTRLRSFISYVNEKEGEDKI 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00942 888 Pfam Ligand-gated ion channel 809 839 IPR001320 GO:0015276|GO:0016020
Cca11g00942 888 PANTHER GLUTAMATE RECEPTOR 15 885 - -
Cca11g00942 888 CDD PBP1_GABAb_receptor_plant 32 427 IPR044440 -
Cca11g00942 888 Gene3D - 578 705 - -
Cca11g00942 888 PIRSF IGluLR_plant 1 888 IPR017103 -
Cca11g00942 888 Gene3D - 753 814 - -
Cca11g00942 888 Pfam Bacterial extracellular solute-binding proteins, family 3 524 808 IPR001638 -
Cca11g00942 888 Gene3D - 147 427 - -
Cca11g00942 888 SMART GluR_14 466 809 IPR001320 GO:0015276|GO:0016020
Cca11g00942 888 Pfam Receptor family ligand binding region 49 412 IPR001828 -
Cca11g00942 888 CDD GluR_Plant 465 807 - -
Cca11g00942 888 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 44 60 - -
Cca11g00942 888 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
Cca11g00942 888 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 325 337 - -
Cca11g00942 888 Gene3D - 49 402 - -
Cca11g00942 888 Gene3D - 464 577 - -
Cca11g00942 888 SUPERFAMILY Periplasmic binding protein-like I 27 458 IPR028082 -
Cca11g00942 888 SUPERFAMILY Periplasmic binding protein-like II 443 808 - -
Cca11g00942 888 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 15 885 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00942 Cca-Chr11 19942500 19947712 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00942 1 883 Ion Channels AT1G42540 57.790 0.0 1045
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00942 K05387 - gmx:100789442 1484.54