Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00940 ATGAGCAAAGTTTGGCTTCTTGTCCTTGTGATCTTCTACAGTAGCTTGCCCTCAAAAGGAACAAACAATGTTTCTACGAGACCAAGTTCCGTTAACGTTGGGGCAATTTTATCTTTCAACTCTACAATTGGAAGAGTTGCGAAAGTTGCCATACAAGCTGCAGTAGATGATATAAATTCCAATGCAACGATTCTGAATGGAACTAAGCTTAATATTTCAATGTTGGACACCAAATTATCCACTGGATTTCTAGGAATCATTGATTCATTTCTATTGATGGAAAGTGACACTGTGGCCATAATTGGTCCTCAGTACTCAGTCATGGCACATGTGATTTCACACATAGCAAATGAGATGCAAGTGCCTCTACTTTCATTTGCAGCAACAGATCCAACACTGACTTCACTGCAGTTCCCATATTTTGTTAGGACAACACAGAGTGATCTGTGTCAGATGGCTGCTGTGACAGAAATTGTTGATCACTTTCGATGGAGAGATGTCGTAGCCATTTACGTTGATGATGATCATGGAAGAAATGGGGTGGCTGCATTAGGGGATAAGCTAGCAGAGAAACGTTGTAAAATATCATATAAAGTACCCTTTGAACCTTCTGATAATATAACCCCGGAAGAAATAAACAGTGCATTAGTTAAGGTAGCTTTAATGGAGTCTAGGGTAATAGTCCTTCACATATACCCTTCTTTTGGCCTAAAAGTACTTCATGCAGCTAGGTCACTTGGCATGATGGGAAGTGGTTATGTGTGGATAGCCACAGATTGGCTTTCTACAGTGCTAGACTCCGATCCATCATTGCCCACTTCTCCAGACATGAATGACATCCAAGGTGTTATCACCTTGCGCATGCATACACCAGATTCAGACATCAAAAAAAAATTTATTTCTAGGTGGAAAAAACTGAGCCAAAAGGAAGATCCTAATCAGGACCCTTCTGGCTTTAATATCTTTGGCCTTTACGCCTATGACACAGTTTGGGTGCTTGCTTCAGCACTCGATGCATTTTTTAAGAGTGGGGGAACTGTGTCATTTTCAAATGATTCAAGTCTAAACATGTTAATTAAACGGGACACCTTTCACTTGGATACTATGGGGGTGTTTGCTGATGGTGACAGGTTGCGTAAAAAAATTTTAGAAGTGAACAGAAGTGGTTTAACAGGCCAAATAGAGTTTAGTGCAGATGGAAACTTGGTTAATCCATCATATGAAATCATTAATGTGATAGGCACTGGAATTAGGAGGATTGGTTATTGGTCTGAAGCCTCTGGCCTCCACACTGGGGAAGGTCCTAATCACTCCAATTCTAGTGGTCTATATGGTGTCATATGGCCTGGTCAAACAACCCAAACCCCACGTGGTTGGGTTTTTGCAAGCAATGGAAGACCCTTGAAAATTGGGGTGCCTCTTAGAATTAGTAACCGTGAGATTGTGTCAAAAGTTGAGGGAACTGAGATGTTTGGTGGTTATTGCATAGATGTGTTTACTGCTGCTCTAAACTTGTTGCCTTATCCGGTTCCATTCAAGTTTATTCCATTTGGTGATGGTAAAACCAACCCTTTAAATTCAGACCTTCTTCACATGATCACAAATGGCACCTTCGATGCTGTGGTGGGAGACATTACCATTACTACAAACCGAACCAAGATAGTGGATTTTACACAGCCATATATTGAGTCCGGTCTAGTTGTTGTGGCACCTATCAAGAAGTTGAAATCCAGTGCTTGGGCTTTCCTCACACCATTCACTCCAATGATGTGGTTTGTGACAGGAATGTTTTTCTTAGTTGTGGGAGCTGTGGTGTGGATTTTAGAGCGTCGCATAAATGATGACTTTAGAGGCCCAGCTAGAAGGCAATTTGTCACCATTATCTGTCTTACATTTGAGAAAAACCCCTTCTATGCAGGAGAGAAAACTGTGAGCGCCCTTGGACGCTTGGTGCTAATCATATGGTTGTTTGTGGTTTTGATACTGAACTCAAGCTATATTGCAAGCTTGACCTCCATCCTAACCGTGGAACAGCTTTCTTCCTCAGTTAAAGGAATTGAAAGCTTAGTAATAAGCAACGAGCGCATTGGTTTCCTGAGGGGTTCATTTGCTGAAAATTATCTGACTGAGGAGCTCAACATACACAGATCAAGGCTTGTTCCTCTCAACTGCGCATCAGAATATGAAAAGGCCTTGTCAGATGGACCAGCTAATGGCGGTGTTGCTGCAATAATAGATGAACGTGCCTACATGGAGCTCTTCCTATCCACCAGATGTGAATTTGGTATTGTTGGTCAAGAGTTCACCAAGATGGGATGGGGTTTTGGCTTCCCAAGGGACTCTCCCCTAGCAATTGACATGTCAACTGCCATCCTAAAACTATCAGAAAACGGTGACCTTCAGAGGATTCACGACAAATGGCTAACAAGAAGTGCTTGCAGCTCAGAGGGAGCCAAACAAGGCATAGACCGACTTGAGTTAAAAAGCTTTTGGGGACTGTTCCTACTTAGTGGCATAGCATGCTTCATTGCTCTCCTTTGCTATGTTACAAGAATGGCCTACCGTTTCAGCAGACACTCCAATACTAACCTTGAAGGCTCATCACGCTCTGCACGTCTTCGATCTTTCCTTTCCTTTGTTAATGAAAAAGAAGTGGAAGACAAATGCAGGCCAAAGAGAAGGCGAAAGGAGAAGTGCTCTTGTAAAAAGGTGGTGCATGATGAAGATGGATCTTTGGATGACTCTATTGTTCGTGTCCACATTGAAAATAATGTCACTGCCCAATGTTAA 2790 0.4219 MSKVWLLVLVIFYSSLPSKGTNNVSTRPSSVNVGAILSFNSTIGRVAKVAIQAAVDDINSNATILNGTKLNISMLDTKLSTGFLGIIDSFLLMESDTVAIIGPQYSVMAHVISHIANEMQVPLLSFAATDPTLTSLQFPYFVRTTQSDLCQMAAVTEIVDHFRWRDVVAIYVDDDHGRNGVAALGDKLAEKRCKISYKVPFEPSDNITPEEINSALVKVALMESRVIVLHIYPSFGLKVLHAARSLGMMGSGYVWIATDWLSTVLDSDPSLPTSPDMNDIQGVITLRMHTPDSDIKKKFISRWKKLSQKEDPNQDPSGFNIFGLYAYDTVWVLASALDAFFKSGGTVSFSNDSSLNMLIKRDTFHLDTMGVFADGDRLRKKILEVNRSGLTGQIEFSADGNLVNPSYEIINVIGTGIRRIGYWSEASGLHTGEGPNHSNSSGLYGVIWPGQTTQTPRGWVFASNGRPLKIGVPLRISNREIVSKVEGTEMFGGYCIDVFTAALNLLPYPVPFKFIPFGDGKTNPLNSDLLHMITNGTFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIKKLKSSAWAFLTPFTPMMWFVTGMFFLVVGAVVWILERRINDDFRGPARRQFVTIICLTFEKNPFYAGEKTVSALGRLVLIIWLFVVLILNSSYIASLTSILTVEQLSSSVKGIESLVISNERIGFLRGSFAENYLTEELNIHRSRLVPLNCASEYEKALSDGPANGGVAAIIDERAYMELFLSTRCEFGIVGQEFTKMGWGFGFPRDSPLAIDMSTAILKLSENGDLQRIHDKWLTRSACSSEGAKQGIDRLELKSFWGLFLLSGIACFIALLCYVTRMAYRFSRHSNTNLEGSSRSARLRSFLSFVNEKEVEDKCRPKRRRKEKCSCKKVVHDEDGSLDDSIVRVHIENNVTAQC 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00940 929 CDD GluR_Plant 466 808 - -
Cca11g00940 929 SMART GluR_14 469 810 IPR001320 GO:0015276|GO:0016020
Cca11g00940 929 SUPERFAMILY Periplasmic binding protein-like I 27 459 IPR028082 -
Cca11g00940 929 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 13 927 - -
Cca11g00940 929 SUPERFAMILY Periplasmic binding protein-like II 444 810 - -
Cca11g00940 929 PANTHER GLUTAMATE RECEPTOR 13 927 - -
Cca11g00940 929 Pfam Bacterial extracellular solute-binding proteins, family 3 527 809 IPR001638 -
Cca11g00940 929 Gene3D - 735 815 - -
Cca11g00940 929 Gene3D - 579 712 - -
Cca11g00940 929 PIRSF IGluLR_plant 1 926 IPR017103 -
Cca11g00940 929 Pfam Receptor family ligand binding region 49 414 IPR001828 -
Cca11g00940 929 Gene3D - 49 404 - -
Cca11g00940 929 Gene3D - 460 578 - -
Cca11g00940 929 Gene3D - 147 429 - -
Cca11g00940 929 CDD PBP1_GABAb_receptor_plant 32 429 IPR044440 -
Cca11g00940 929 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 44 60 - -
Cca11g00940 929 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 326 338 - -
Cca11g00940 929 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
Cca11g00940 929 Pfam Ligand-gated ion channel 810 841 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00940 Cca-Chr11 19919088 19923668 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00940 1 915 Ion Channels AT1G42540 56.424 0.0 1038
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00940 K05387 - gmx:100789442 1580.46