Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00938 ATGTCAGATATCATTGATATGATGAATTCTTCTTCATCACCACCCAGATCATCTAATGCATCCATATTCCTTAATTCTATTAGACAAGTTCAGTTTGAGAATGCTCCTTTACCCTTAATTTCTAGCATAAATCCCAACTTGAGCCAAGCTAACCAACAACAAATAGCTACTCCATGGCCAAATTTTGGACATAGCGATGAGCCTTCTCAAATTGTTACTAGGTTCCAACCTGACATGCAAGATGAAATTGTTAGATTACATGAACCAAATATGTATTTGGCTCCTGATAGAGCTATACTCAATGAGCTTTGGACCCAAAGAGAGCATGAGTTATTCGTGATGGGGCTAATCAGGTATGGAAATCGACGTTGGACCAGAATTGCCAATGAATTTTTGCCCAATAAAACCCCTCAACAAGTTCAGAGCTATGCTGCTAACTTTCTGCGAGACATTCCACCTCCATCATCCCCACATGGCTTTAGGGGAAGGATCTCCATCACTTCCTCACCTAATCCTGTGTCCATAGATTGGAACCTGGTTGTTGATCCATTTGCCCCAAACTCCATGCCTATGCTTGTTAACAACCAATCCCAACAACTTTTTTCCCTTGTCCCAATGAATGCTTTCCTTATGACTCCACCAAATGGAGAAGCTAGCACTAGCAACAATATTAACACAAACACCAACATGTATGAGTTTCTAACACATACAAGTGATGCAATTGCAAACACTTCCATTGATGTTACTCCTAGTGCTAATGAAGAAATTGATTTGGAGCTTCACTTGGGTCGAAATCAGTGA 801 0.4032 MSDIIDMMNSSSSPPRSSNASIFLNSIRQVQFENAPLPLISSINPNLSQANQQQIATPWPNFGHSDEPSQIVTRFQPDMQDEIVRLHEPNMYLAPDRAILNELWTQREHELFVMGLIRYGNRRWTRIANEFLPNKTPQQVQSYAANFLRDIPPPSSPHGFRGRISITSSPNPVSIDWNLVVDPFAPNSMPMLVNNQSQQLFSLVPMNAFLMTPPNGEASTSNNINTNTNMYEFLTHTSDAIANTSIDVTPSANEEIDLELHLGRNQ 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00938 266 SMART sant 100 150 IPR001005 -
Cca11g00938 266 CDD SANT 104 148 IPR001005 -
Cca11g00938 266 PANTHER MYB-LIKE DNA-BINDING DOMAIN PROTEIN 33 263 - -
Cca11g00938 266 ProSiteProfiles SANT domain profile. 104 152 IPR017884 -
Cca11g00938 266 ProSiteProfiles Myb-like domain profile. 104 148 IPR001005 -
Cca11g00938 266 Pfam Myb-like DNA-binding domain 104 146 IPR001005 -
Cca11g00938 266 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 33 263 - -
Cca11g00938 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 152 IPR017930 -
Cca11g00938 266 SUPERFAMILY Homeodomain-like 104 151 IPR009057 -
Cca11g00938 266 Gene3D - 102 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00938 Cca-Chr11 19779712 19780744 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca11g00938 Myb_DNA-binding 3.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00938 - - gmx:102659381 210.305