Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00937 ATGAAAAAGGTTTGGCTTCTTGTTCTCGTGATGTTCTACCATGGCTTTCCTTCAGAAGGAATCAACAATGTTTCTACAAGACCACGCACCGTTAACATAGGGGCACTTATGTCCTTCAATTCAACCGTTGGCAGAGTGGCTAAAGTTGCCATAGAAGCTGCAGTGGATGATATAAACTCCAATGCCACGATTCTGAATGGAATTAAGCTTAATATTTCAATGTTGGACACCAAATTATCCTCTGGATTCCTAGGAATTATTGACTCATTAAGATTGATGGAGAGTGACACTGTGGCTATAATTGGTCCTCAGTATTCAGTCATGGCTCATGTGATTTCTCACATAGCAAACGAGATGCAAGTGCCTCTACTTTCATTTGCAGCAACAGATCCAACACTGACTTCACTACAGTTCCCATATTTTGTGAGAACAACACAGAGTGATCTGTGTCAGATGGCTGCTGTGGCAGAAATTGTTGATCACTTTCAATGGAGAGATGTCATAGCCATCTACGTTGATGATGATCATGGAAGAAATGGGGTGGCTGCACTAGGGGATAAGCTAGCAGAGAAACGTGGTAAAATATTACATAAATCACCATTTAGGCCTAATAACTTTACCCCGGAAGAAATAAACAGTGCATTAGTTAAGATAGCTTTGATGGAATCAAGGGTAATAGTTCTTCACATATATCCTTCTTTTGGTCTAGAAGTACTTCATGCAGCTCAGTCACTTGGCATGATGGGAAGTGGCTATGTGTGGATAGCCACAGATTGGCTTTCTACAGTGCTGGATTCAGATCCATCATTGTTCACAACTCGAGCCATGAATGACATCCAAGGTATTATCACCTTGCGCATGTATACCCCAGACTCAGAAATCAAAAGAAAGTTTAGTTCTAGGTGGAACAAACTGAGCCAAGGAAAGGACTCTCATAAGGGTCCTTTTGCATTGAACACCTTTGGCCTTTACGCCTATGACACTGTTTGGGTGCTTGCTTCAGCACTCGATGCATTTTTTAGGAGTGGGGGAACTGTGTCATTTTCAAATGATTCAAGTCTAAACATGTTGAGAGGGGACACCCTTCACATGAATACTATGGGGGTGTTTGTTGGTGGTGAATCGTTGCGTCAAAAAATTTTAGAAGTGAATAGAAGTGGTTTAACAGGCCAAATGGAGTTTAGTGCAGATGGAAACTTGGTTAATCCATCATATGAAATAATTAATGTGATAGGCACTGGAATTAGGAGGATTGGTTATTGGTCTGAAGCCTCTGGTCTCCACACTGGTGGTGAAGCTCCTAATCATTCCTATTCTAGTGTAGGACTATATGGTGTCATTTGGCCTGGTCAAACAACTCAAACCCCACGTGGTTGGGTTTTTGCAAGCAATGGAAGACACTTGAGAATAGGGGTGCCACTTAGAATTAGTAACCCTGAGATTCTGTCAAGAATTGAGGGAACAACTGAGATGTTTAGAGGTTATAGCATCGATGTGTTTACTGCTGCGTTGAACTTGTTGCCTTATCCTGTTCCCTACAAGTTTGTTCCATTTGGAGATGGTAAAACCAACCCACTAAATACAAAACTTCTCAACAAGATCACAATTGGAGAGTTCGATGCTGTTGTGGGGGACATTACCATTACCACAAACCGAACTAAGATAGTGGATTTTACACAGCCATATATTGAGTCTGGGCTAGTTGTTGTGGCACCAATTAGGAAAATGAAATCCAGTGCTTGGGCTTTTCTGAGACCATTCTCTCCAATGATGTGGTTTGTGACAGGAATGTTTTTCTTAGTTGTGGGAGCTGTTGTGTGGGTTTTAGAACGTCGCTTAAATGATGAATTTAGAGGCCCAGCAAGAAGGCAGTTTGTGACCATTATATGGTTTAGCTTTTCAACCCTGTTTTTTTCACATAGAGAGAAAACTGTGAGCACCCTTGGTCGGTTGGTGCTAATGATATGGCTGTTTGTGGTATTGATAGTGAACTCAAGCTATATTGCAAGCTTGACCTCGATCCTAACTGTGGAGCAGCTGTCTTCCTCAGTTAAGGGAATTGAAAGCTTGGTAACAAGCAACGAGCGCATTGGTTTCCAGTGTGGGTCCTTTGCTGAAAATTATCTGACTGAGGAGCTCAACATACACAGGTCCAGGCTTGTCCCTCTCAACTCAGCATCAGAATATGAGAGGGCCTTGAAGGATGGACCAGCTAAAGGTGGTGTTGCTGCAATAATAGATGAACGTGCCTACATGGAGCTCTTCCTTCCTACCAGATGTGATTACGGTATTGTTGGCCAAGAGTTCACCAAGATGGGATGGGGCTTTGCCTTCCCAAGGGACTCTCCCCTCGCAATTGACATGTCCACAGCCATCCTAAAACTATCAGAAAACGGTGACCTTCAGAGAATTCACGACAAATGGCTAACAAGAACTGCGTGCAGCTCTGAGGGAGCGAAACACGACATAGACCGACTTGAGTTAAAAAGCTTTTGGGGACTGTTCCTACTTAGTGGCATAGCATGCTTCATTGCTCTCCTTTGCTATGTTACAAGAATGGCCTACCGTTTCAGCATACACTCCAATACTAACCTTGAGGGCTCGTCACACTCTACTCGTCTTCGATCCTTCTTTACCTTTGTGAGTGAAAGAGAAGAGGAAGACAACATGAACATTTCAAAGAAAAAACATAACGAGAAGGGTTCTAGCAGAAGGGTGGCACATGAAGATGGATTGCATAGCTCAAGTGTTACTGTCCATATCGCAGAGCATGCCTAA 2778 0.4284 MKKVWLLVLVMFYHGFPSEGINNVSTRPRTVNIGALMSFNSTVGRVAKVAIEAAVDDINSNATILNGIKLNISMLDTKLSSGFLGIIDSLRLMESDTVAIIGPQYSVMAHVISHIANEMQVPLLSFAATDPTLTSLQFPYFVRTTQSDLCQMAAVAEIVDHFQWRDVIAIYVDDDHGRNGVAALGDKLAEKRGKILHKSPFRPNNFTPEEINSALVKIALMESRVIVLHIYPSFGLEVLHAAQSLGMMGSGYVWIATDWLSTVLDSDPSLFTTRAMNDIQGIITLRMYTPDSEIKRKFSSRWNKLSQGKDSHKGPFALNTFGLYAYDTVWVLASALDAFFRSGGTVSFSNDSSLNMLRGDTLHMNTMGVFVGGESLRQKILEVNRSGLTGQMEFSADGNLVNPSYEIINVIGTGIRRIGYWSEASGLHTGGEAPNHSYSSVGLYGVIWPGQTTQTPRGWVFASNGRHLRIGVPLRISNPEILSRIEGTTEMFRGYSIDVFTAALNLLPYPVPYKFVPFGDGKTNPLNTKLLNKITIGEFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIRKMKSSAWAFLRPFSPMMWFVTGMFFLVVGAVVWVLERRLNDEFRGPARRQFVTIIWFSFSTLFFSHREKTVSTLGRLVLMIWLFVVLIVNSSYIASLTSILTVEQLSSSVKGIESLVTSNERIGFQCGSFAENYLTEELNIHRSRLVPLNSASEYERALKDGPAKGGVAAIIDERAYMELFLPTRCDYGIVGQEFTKMGWGFAFPRDSPLAIDMSTAILKLSENGDLQRIHDKWLTRTACSSEGAKHDIDRLELKSFWGLFLLSGIACFIALLCYVTRMAYRFSIHSNTNLEGSSHSTRLRSFFTFVSEREEEDNMNISKKKHNEKGSSRRVAHEDGLHSSSVTVHIAEHA 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00937 925 CDD PBP1_GABAb_receptor_plant 32 427 IPR044440 -
Cca11g00937 925 Pfam Receptor family ligand binding region 49 412 IPR001828 -
Cca11g00937 925 MobiDBLite consensus disorder prediction 889 913 - -
Cca11g00937 925 Gene3D - 580 714 - -
Cca11g00937 925 Gene3D - 467 579 - -
Cca11g00937 925 PIRSF IGluLR_plant 1 921 IPR017103 -
Cca11g00937 925 SUPERFAMILY Periplasmic binding protein-like I 27 459 IPR028082 -
Cca11g00937 925 MobiDBLite consensus disorder prediction 889 911 - -
Cca11g00937 925 SUPERFAMILY Periplasmic binding protein-like II 443 810 - -
Cca11g00937 925 Pfam Ligand-gated ion channel 811 842 IPR001320 GO:0015276|GO:0016020
Cca11g00937 925 Gene3D - 147 427 - -
Cca11g00937 925 PANTHER GLUTAMATE RECEPTOR 16 921 - -
Cca11g00937 925 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 16 921 - -
Cca11g00937 925 Pfam Bacterial extracellular solute-binding proteins, family 3 492 810 IPR001638 -
Cca11g00937 925 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 44 60 - -
Cca11g00937 925 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
Cca11g00937 925 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 325 337 - -
Cca11g00937 925 Gene3D - 758 816 - -
Cca11g00937 925 SMART GluR_14 469 811 IPR001320 GO:0015276|GO:0016020
Cca11g00937 925 CDD GluR_Plant 468 809 - -
Cca11g00937 925 Gene3D - 49 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00937 Cca-Chr11 19722028 19734557 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00937 1 904 Ion Channels AT1G42540 56.943 0.0 1056
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00937 K05387 - gmx:100790502 1613.59