Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00936 ATGTCGTGTTCTTCTTCATCTGGGTCTGAAGAGGACGATGAGGGGTTCGACTCTTACCGGAAAGGAGGGTACCATGCCGTCAGAATCGCCGATCAGTTCGCCGGTGGAAGGTACATAGCGCAGAGGAAACTTGGTTGGGGTCAGTTTTCCACCGTTTGGCTTGCCTATGATACTACAACATCTGCGTATGTTGCTCTCAAGATCCAGAAAAGTGCAGCCCAGTTTGTTCAGGCCGCCCTTCATGAAATTGATGTTCTTTCATCCATTTCTGATGGTGTTGATGTGAATTCAAAATGTGTAGTCCAGTTGATTGACCACTTTAAGCACACAGGTCCTAATGGCCAGCACCTTTGCATGGTGCTTGAGTTTCTTGGGGATAGCTTGCTTCGTCTAATAAAATATAACCGGTACAAAGGCCTTCCAATGAATAAACTTAGGGAGATCTGCAAATGCATTTTGATTGGTTTGGATTATTTGCATAGAGAACATGGTATTATCCACACAGACCTAAAACCGGAAAATGTTCTTCTGATTTCTACCATTGATCCTGCCAAAAACCCTGTTAAATCTGGAGTCACCCCAATATTAGAGAGGCCTGAGGGAAACACAAATGGTGGAGTTACTAGTCTTATTGAGAAAAAGTTGAAAAGGAGAGCTAGGAGGGCAGTTGCTAAAATATCTGGAAGAGGTGTTTCAATAGGAGGAACTGAAGCTCCAAAGTCTGAGAGAAATCTTGATGGGATTGATGTGAGATGCAAGGTGGTAGATTTTGGAAATGCATGTTGGGCTGATAAGCAGTTTGCTGATGAAATTCAGACAAGACAGTACAGAGCTCCTGAAGTAATATTGCAGGCTGGTTATTCCTTTTCCGTTGACATGTGGTCTTTTGCTTGTATCGCTTTTGAGCTTGCCACCGGTGATATGTTATTTACACCCAAGGTTGGACAAGGTTTTAGTGAGGACGAGGATCACCTTGCCCTGATGATGGAACTACTTGGAAAGATGCCCCGGAAGATTGCTACAGCTGGAGCAAAATCCAAGGATTTCTTTGACAGACATGGGGATCTCAAAAGGATTCGAAGACTAAAGTTTTGGCCCTTGAGCAAATTGTTGATTGATAGATATAAGTTTCCAGAGAGTGAAGCTCATGAGTTTTCAGAGTTTCTTTTACCACTCCTTGATTTCGCGCCGGAGAAGCGGCCAACTGCTCAGCAGTGCCTGCAACACCCGTGGCTCAAGGACTGTGAGTCTGCACCAAATAATTCTAGTGTGGAAAAAGTGGATGCTGGGATGAGCAACCTTAAAATCAAGGCGGGACAGTGA 1323 0.4429 MSCSSSSGSEEDDEGFDSYRKGGYHAVRIADQFAGGRYIAQRKLGWGQFSTVWLAYDTTTSAYVALKIQKSAAQFVQAALHEIDVLSSISDGVDVNSKCVVQLIDHFKHTGPNGQHLCMVLEFLGDSLLRLIKYNRYKGLPMNKLREICKCILIGLDYLHREHGIIHTDLKPENVLLISTIDPAKNPVKSGVTPILERPEGNTNGGVTSLIEKKLKRRARRAVAKISGRGVSIGGTEAPKSERNLDGIDVRCKVVDFGNACWADKQFADEIQTRQYRAPEVILQAGYSFSVDMWSFACIAFELATGDMLFTPKVGQGFSEDEDHLALMMELLGKMPRKIATAGAKSKDFFDRHGDLKRIRRLKFWPLSKLLIDRYKFPESEAHEFSEFLLPLLDFAPEKRPTAQQCLQHPWLKDCESAPNNSSVEKVDAGMSNLKIKAGQ 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00936 440 PANTHER OS07G0472400 PROTEIN 7 428 - -
Cca11g00936 440 ProSiteProfiles Protein kinase domain profile. 38 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00936 440 Gene3D Transferase(Phosphotransferase) domain 1 92 412 - -
Cca11g00936 440 SUPERFAMILY Protein kinase-like (PK-like) 32 417 IPR011009 -
Cca11g00936 440 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Cca11g00936 440 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Cca11g00936 440 SMART serkin_6 38 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00936 440 Pfam Protein kinase domain 251 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00936 440 Pfam Protein kinase domain 39 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00936 440 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Cca11g00936 440 CDD STKc_SRPK 27 412 - -
Cca11g00936 440 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 7 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00936 Cca-Chr11 19704776 19709993 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00936 4 412 EF-hand Containing Proteins AT5G22840 51.188 7.26e-168 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Cca11g00936 Pkinase 6e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00936 K08832 - gmx:100814976 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00936 11 19704776 19709993 Cca11g00936 11 19704776 19709993 ECH