Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00932 ATGGGAGGCTTATTGCACATGTTTGAGTTCAATCCGGGAAGGATGGCCAAGAAAGTCCATTCCCATAAGAACCATAATGGTGACCTGATAACTTCTGGACATAGCATGGAGCTGAAAGTTGAATCATCTCAGGTCCACTATCCAGAAGGAGAAATATCATACTCTTGTCAAGCAGATGATGGATGGTCAAAGAATATTAGTTACTCAAATGTGGCTTCAGTGAAAAAGCTGAACAATGAGGAGTTATCAAAACAATCAGGCACCAGAAATAAAGCACCAAGCCTTGTGGCAAGGTTGATGGGGATAGACACCATGCCATTACCATTAGAGACTAAATCTGTTGTTCCATTGGATGAAAGCAAATATGAAAATATTGAGAGGAAGTTTCCAAAGAAAGGAATGAATGCAAGGGGTTCCTCCAAATTGGATTCTTTTAGCTACATGGAACTTGATTCATTTTATCAAGACATTGATGGTGGTGGTGGATGGGGACAGAATTTTGGAAAACCAAGGCCAAGGGAACATCCTCTGGAAGAGGAACTCCAAATATTCAAGAAAGAATTTGAAGCATATCAAGAAGCAAGGTTCAAGGAGTGTTCAATTGCTGTCGAAAAAGGAGGTGGTTATAGGCAAATGCTTCATCAAGAAAACCTGAGCAAGGAAAAGATGCAACATATTGAAAGTTCAAAGACAGATAGCCACTCATTCAAAACAAAGATACCCAATGATGATATCGTGGAGCCAATCTCAACTAAGAAAAAAGAATCCTTTCCTTCAAGAAGTAAAACACTAAGTAGAGACTTTGAGCAGTCTTTGATGATGAAATCAAGAAGCAGATTAGATATATGTGCTTCTCCCACTCCAATAGTTATCTTGAAGCCTGGTTCTGATAGGTTTTGCAATTGCAACCATGAAGATAATTGCTTCAATTTTTCAGGCACTTTACAAGGGGGAAAAGATATAGAAGATTTTCTTGAGGAAGTGAGAGAGAGGTTGAAATGTGAACTTCAAGGGAAAATAGCCAAAAAGGATTACAATGAAAAACCTCTTGATGCTAAAGTGGTCAGAGAAAGTCTAACAAGAGATGCTGAACCAAATTTACTTCGCTCAGAATCAACAAGATCATACAAAAGTGAAATGCACTTCAACGGACCAAGTTCTCCAGAAATTTTCAACATAGATACCAGGAGATTCTTTTCAGAGAGGCTAAGAAATATTGTAAGAAGTGAACTGCATTTGGACATTCCTGAAGTTGGTTGTTATTTAGACAATGACACAATTAGGCTAAATCAAGATACTGTAAAGTGTGCAAATGACAAGAGCCAGTGGGGAATTTTGAAAAAGAGAAAAGAATTACAAACAGGTTCCTATAGACATAAATTAGATGACAACGTATTGTTCCAAAAGGAGTTGTCTCCTAGAAACCTTGAAAGATCCTTGTCTGCTCCTGCATCAGGAACATCATTTGGGAGGCTTCTTCTAGAGGACCGCCACATTTTAACAGGCGCTCTTATTCAGAGGAAGCTTGAAGATGTTGAAATGCAGGTGGATGTTAAAAAGAAGAAAGATGGATTCAATATTAAAGAAAAACTTTCCACTTTTAAATATACTCTTGGTCTAAGAGGGAAGCTGTTTGGAAAAAGGGTTAAGTCAATAGTAGAATCACATGGCAGTGAATATGGTCCCATTTTGAGAGATATCAAGAGTGGACCAACTGTTCTCATGAAATATGGTGAGAGACATGAGAACTCCACTGAGGTACCTCCTAGTCCTGCATCTGTTTGCAGTTGTGCTCATGAGGAACATTGGAGACAGGCTGAATATTCAAGTCCAATATCAACTCCAGATGTATCTTCATTAGAAGATATTGTTATTCCCAAGGTTTTTAGAGATATTAGCTCTGGTTTGAATGAGCTAAAGAGGCAACTCAGTCAACTTGATTCTGATTACTCCGAGGACTTCATTACAAAGCAGGAGTCTGTTGAGTCTGAATTAGTTCAATTGGATGATCCAGCAGAATCTTATGTAAGAGATCTTCTTGTTGCCTCTGGTTTGTACTTTGGTTCATGGGATAAATCTCTATTAAGAGGGGACACATATGCAAAGCCTATTGGCAACTCAGTTTTTGAAGAAGTGGAAGAATCTCATAAGAAGCTGATCAAGGATAATGAAAGATCCAGAAAGGATCAACATAAGAACAAGTTAGAGCACAAGGTTTTGCTTGATTTGTTAAATGAGGCACTCTCCATTGTTCTTGGACCACCTTTGACATTGTCTAGATTCAGAAGGAAACCATGCAATTCCTCCATGCAGCCTCCACCATGTGGAAAGGAACTACTAAAGTTAGTATGGGACATTGTTCGTATTTCCTTATGTTCTGTATCAAACACATCTTATTCACTTGATAGTTTGGTGGCGCAAGATATAGGATCTATCTCCTGTTCTCGGCTAATAAATGATCAGATTGATATATTGGAAAGAGAGATGGCATGTATTATCAGTGATGATTTGCTTGAAGAACTCACAAAGGATATGCTCTTGTAG 2544 0.384 MGGLLHMFEFNPGRMAKKVHSHKNHNGDLITSGHSMELKVESSQVHYPEGEISYSCQADDGWSKNISYSNVASVKKLNNEELSKQSGTRNKAPSLVARLMGIDTMPLPLETKSVVPLDESKYENIERKFPKKGMNARGSSKLDSFSYMELDSFYQDIDGGGGWGQNFGKPRPREHPLEEELQIFKKEFEAYQEARFKECSIAVEKGGGYRQMLHQENLSKEKMQHIESSKTDSHSFKTKIPNDDIVEPISTKKKESFPSRSKTLSRDFEQSLMMKSRSRLDICASPTPIVILKPGSDRFCNCNHEDNCFNFSGTLQGGKDIEDFLEEVRERLKCELQGKIAKKDYNEKPLDAKVVRESLTRDAEPNLLRSESTRSYKSEMHFNGPSSPEIFNIDTRRFFSERLRNIVRSELHLDIPEVGCYLDNDTIRLNQDTVKCANDKSQWGILKKRKELQTGSYRHKLDDNVLFQKELSPRNLERSLSAPASGTSFGRLLLEDRHILTGALIQRKLEDVEMQVDVKKKKDGFNIKEKLSTFKYTLGLRGKLFGKRVKSIVESHGSEYGPILRDIKSGPTVLMKYGERHENSTEVPPSPASVCSCAHEEHWRQAEYSSPISTPDVSSLEDIVIPKVFRDISSGLNELKRQLSQLDSDYSEDFITKQESVESELVQLDDPAESYVRDLLVASGLYFGSWDKSLLRGDTYAKPIGNSVFEEVEESHKKLIKDNERSRKDQHKNKLEHKVLLDLLNEALSIVLGPPLTLSRFRRKPCNSSMQPPPCGKELLKLVWDIVRISLCSVSNTSYSLDSLVAQDIGSISCSRLINDQIDILEREMACIISDDLLEELTKDMLL 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00932 847 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 1 846 - -
Cca11g00932 847 Coils Coil 709 729 - -
Cca11g00932 847 Pfam Domain of unknown function (DUF4378) 674 840 IPR025486 -
Cca11g00932 847 Pfam DUF761-associated sequence motif 87 106 IPR032795 -
Cca11g00932 847 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 1 846 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00932 Cca-Chr11 19562531 19568247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00932 74 845 TRM (TON1 Recruiting Motif) Superfamily AT2G17550 37.360 2.86e-125 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00932 - - gmx:100810825 1302.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00932 11 19562531 19568247 Cca11g00932 11 19562531 19568247 ECH