Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00930 ATGCCGAAGGCCAAAGCCGATGCCAAAGCCACCGACAACCGGTTGAAGCGCAAGGGCGCCGGTGCCGGAAGGAAGCAATCGAAGAAAGCTGCTAAGGATCCTAACAAGCCGAAGAGACCTCCAAGTGCTTTCTTTGTTTTCATGTCTGAGTTCAGGGAGCAGTTCAAGAAGGAACATCCTAACAACAAATCTGTCGCTGTTGTTGGTAAAGCTGGTGGTGAAAAGTGGAAATCTATGTCTGATGCTGAGAAGGCTCCCTTTGTTGCTAGGGCAGAGAAGAAGAAAGAAGAGTATGACAAAAGTATTTTGTCCTACAACAAGAAATTGGAGGGAAAGAATTCTGAGGAAGATGAGTCTGACAAGTCAAAGTCTGAAGTCAATGATGATGAGGAAGATGAGGAGGACGATGAAGATGACGAGTGA 423 0.4634 MPKAKADAKATDNRLKRKGAGAGRKQSKKAAKDPNKPKRPPSAFFVFMSEFREQFKKEHPNNKSVAVVGKAGGEKWKSMSDAEKAPFVARAEKKKEEYDKSILSYNKKLEGKNSEEDESDKSKSEVNDDEEDEEDDEDDE 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00930 140 MobiDBLite consensus disorder prediction 69 140 - -
Cca11g00930 140 Gene3D High mobility group box domain 21 133 IPR036910 -
Cca11g00930 140 SUPERFAMILY HMG-box 28 110 IPR036910 -
Cca11g00930 140 Pfam HMG (high mobility group) box 37 105 IPR009071 -
Cca11g00930 140 Coils Coil 88 108 - -
Cca11g00930 140 MobiDBLite consensus disorder prediction 1 43 - -
Cca11g00930 140 SMART hmgende2 36 107 IPR009071 -
Cca11g00930 140 MobiDBLite consensus disorder prediction 122 140 - -
Cca11g00930 140 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Cca11g00930 140 MobiDBLite consensus disorder prediction 1 19 - -
Cca11g00930 140 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 3 137 IPR031061 -
Cca11g00930 140 CDD HMGB-UBF_HMG-box 37 102 - -
Cca11g00930 140 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 3 137 - -
Cca11g00930 140 PRINTS High mobility group (HMG1/HMG2) protein signature 3 23 - -
Cca11g00930 140 PRINTS High mobility group (HMG1/HMG2) protein signature 71 90 - -
Cca11g00930 140 PRINTS High mobility group (HMG1/HMG2) protein signature 90 110 - -
Cca11g00930 140 MobiDBLite consensus disorder prediction 76 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00930 Cca-Chr11 19500990 19502747 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Cca11g00930 HMG_box 1.2e-22 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00930 K25507 K22507 gmx:100305957 207.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00930 11 19500990 19502747 Cca11g00930 11 19500990 19502747 ECH