Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00928 ATGGGTCTCAGCTTCTCCTCTGCCTCGGCACGTCACTCCTCTACCCCCAACCTCTCTCAATGTTCAGGTTCACCAAGCACTGAAGACCGAATTCTGAAATGGCCGAACATGAAGGTGTTCAGTTACGAGGAGCTCAAATCTGCAACAAACAATTTTAGCCCTGACACAGTGGTCGGTAAGGGTGTTCTTGGCCAAGTTTTCAAGGGATGGTTAAATGAGAAGACCCTCTCCCCTGCCAGACCCAACTCTGGTTTTGGAATGGCCGTTGCCATCAAAAAGTTGAACCCCGAAAGCACACAAGGCTTTCAAGAGTGGCAGTCAGAAGTAAACTTTTTAGGAAATCTTACTCACCCCAACCTGATCAAGCTATTGGGATACTGTTGGGATGATGATGAGCTTCTTCTTGTGTACGAGTTCATGCCTAAGGGAAGCTTAAACAATCATCTGTTCAGAAGAAATCCTAACTTAGAACCACTTTCATGGAACACCAGGCTTAAAATAGCTATTGGTGCAGCTCGGGCTCTAGCTTTCTTGCATGCCTCTGAAAAACAAGTCATATACAGAGATTTCAAGGCTTCACATATACTACTCGATAGGAATTATAATGCAAAAATCTCAGATTTTGGCTTGGCTAAATTGGGGCCTTATGAAGGACAATCACACGTAACTACCAGGGTCATGGGCACGTCTGGTTATGCTGCTCCAGAATATGTGGCAACAGGGCACTTGTATGTGAAAAGTGATGTTTATGGGTTTGGTGTAGTGCTGCTTGAAATGCTGACAAGCATGAGGGCAATTGACGCAAATCGCCCAACAGGGCAGCATAACCTAGTTGAATGGACCGAGCCTTTTCTTTCCTCCGAAACAAAGTTGAAAACCATTATGGACCCTAAAATAAAGGGTCAATATTCACCCAAGGCAGCAATGCAAGCAGCACAACTTACTCTAAAATGCCTACAACCTCGTCCTAACCAACGTCCTTCTATGCAAAATGTACTCGAGGAATTGGAAGCCATTAATGCTATCCATCCAGAAAAAGTTCAAGGAATCTGA 1053 0.4454 MGLSFSSASARHSSTPNLSQCSGSPSTEDRILKWPNMKVFSYEELKSATNNFSPDTVVGKGVLGQVFKGWLNEKTLSPARPNSGFGMAVAIKKLNPESTQGFQEWQSEVNFLGNLTHPNLIKLLGYCWDDDELLLVYEFMPKGSLNNHLFRRNPNLEPLSWNTRLKIAIGAARALAFLHASEKQVIYRDFKASHILLDRNYNAKISDFGLAKLGPYEGQSHVTTRVMGTSGYAAPEYVATGHLYVKSDVYGFGVVLLEMLTSMRAIDANRPTGQHNLVEWTEPFLSSETKLKTIMDPKIKGQYSPKAAMQAAQLTLKCLQPRPNQRPSMQNVLEELEAINAIHPEKVQGI 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00928 350 CDD STKc_IRAK 58 339 - -
Cca11g00928 350 Pfam Protein tyrosine and serine/threonine kinase 56 336 IPR001245 GO:0004672|GO:0006468
Cca11g00928 350 SUPERFAMILY Protein kinase-like (PK-like) 27 342 IPR011009 -
Cca11g00928 350 PANTHER SERINE/THREONINE-PROTEIN KINASE PIX13-RELATED 23 343 - -
Cca11g00928 350 Gene3D Transferase(Phosphotransferase) domain 1 140 348 - -
Cca11g00928 350 MobiDBLite consensus disorder prediction 1 26 - -
Cca11g00928 350 PANTHER OS01G0588500 PROTEIN-RELATED 23 343 - -
Cca11g00928 350 Gene3D Phosphorylase Kinase; domain 1 23 139 - -
Cca11g00928 350 ProSiteProfiles Protein kinase domain profile. 52 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00928 Cca-Chr11 19373886 19379023 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00928 38 336 Glycoside Hydrolase AT3G07070 47.333 2.74e-92 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca11g00928 PK_Tyr_Ser-Thr 9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00928 - - ccaj:109789667 588.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00928 11 19373886 19379023 Cca11g00928 11 19373886 19379023 ECH