Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00927 ATGTTCAGGCAAGTCTTCAACTTTTCTCCACCCTTTCTAAATTCACCCCAAAACACGACATGGGTCGTTCCCCGTTTCCTCGAATTCGATTTCTTCCATGATGGTTTCGATTCCTCTGTTTTCAGGTTCGACCGAATTCTGAAATGGCCGAAAATGAAGGTGTTCAGTTACGAGGAGCTCAAATCTGCAACAAACAATTTTAGCCCTGACACAGTGGTCGGTGAGGGTGGTTTTGGCCAAGTTTTCAAGGGATGGTTAAATGAGAAGACCCTCTCCCCTGCCAGACCCAACTCTGGTTTTGGAATGGCCGTTGCCATCAAAAAGTTGAACTCCGAAAGCACGCAAGGCTTTCAAGAGTGGCAGTCAGAAGTGAACTTTTTAGGAAGGCTTTCTCACCCGAACCTGGTCAAGCTATTGGGTTATTGTTGGGACGATGATCAGCTTCTTCTTGTGTACGAGTTCATGTCAAAGGGAAGCTTGGATTATCATCTATTCAGAAGAAATCCCAACATAGAACCACTTTCTTGGAGCACACGGTTTAAAATAGCCATTGGTGCAGCTCGGGGATTAGCTTTCTTGCACGCCTCCGAAAAACAAGTCATATACAGAGATTTTAAGGCATCAAATATACTACTTGATGGGAATTACAATGCAAAAATCTCAGATTTTGGCTTGGCTAAATTGGGACCTTCTGAAGGACAGTCACATGTAACTACCAGGGTCGTGGGCACATATGGTTATGCTGCTCCAGAATATATTGCAACAGGGCACTTGTATGTGAAGAGTGATGTGTATGGGTTTGGTGTAGTGCTTCTTGAAATACTGACAGGCATGAGAGCACTTGATAGAAAACGCCCAACAGGGCAGCAAAAGCTAGTTGAATGGACCAAGCCTCTTCTTTCTTCCAAGAAAAAGTTGAAAACAATTATGGTTGCTAAAATAGAGGGTCAATATTCACCCAAGGCAGCATGGCAAGCAGTACAACTTACTCTAAAATGCTTAGAAAATGACCCTAGACAACGTCCTTCTATGAAAGATGTTGTTGAGGAATTGGAAGCCATTGAAGCTATCCATGAAAAATCTAAAGGATCCAAAATCTGCTTTCTCACTGCACTTCTCATCAACCTCCTCGGCAGAGAGGTGCAAGAGTATAAATAA 1158 0.4318 MFRQVFNFSPPFLNSPQNTTWVVPRFLEFDFFHDGFDSSVFRFDRILKWPKMKVFSYEELKSATNNFSPDTVVGEGGFGQVFKGWLNEKTLSPARPNSGFGMAVAIKKLNSESTQGFQEWQSEVNFLGRLSHPNLVKLLGYCWDDDQLLLVYEFMSKGSLDYHLFRRNPNIEPLSWSTRFKIAIGAARGLAFLHASEKQVIYRDFKASNILLDGNYNAKISDFGLAKLGPSEGQSHVTTRVVGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEILTGMRALDRKRPTGQQKLVEWTKPLLSSKKKLKTIMVAKIEGQYSPKAAWQAVQLTLKCLENDPRQRPSMKDVVEELEAIEAIHEKSKGSKICFLTALLINLLGREVQEYK 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00927 385 Pfam Protein tyrosine and serine/threonine kinase 71 351 IPR001245 GO:0004672|GO:0006468
Cca11g00927 385 ProSiteProfiles Protein kinase domain profile. 67 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00927 385 PANTHER OS01G0588500 PROTEIN-RELATED 44 361 - -
Cca11g00927 385 Gene3D Phosphorylase Kinase; domain 1 51 154 - -
Cca11g00927 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Cca11g00927 385 Gene3D Transferase(Phosphotransferase) domain 1 155 369 - -
Cca11g00927 385 PANTHER SERINE/THREONINE-PROTEIN KINASE PIX13-RELATED 44 361 - -
Cca11g00927 385 CDD STKc_IRAK 73 354 - -
Cca11g00927 385 SUPERFAMILY Protein kinase-like (PK-like) 49 356 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00927 Cca-Chr11 19338675 19341404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00927 53 351 Glycoside Hydrolase AT3G07070 50.667 7.91e-98 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca11g00927 PK_Tyr_Ser-Thr 6.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00927 - - gmx:100794193 538.495