Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00921 ATGGCATCTTCTTCTTCTTCTTGTCATGTTACTGACATAAAACATGATGTCTTCATCAGCTTTAGAGGCACAGATGTTCGCAAAGGTCTTCTTAGCCATTTGAAGAAAGAATTACGGCGCAGGCAAATTCATACCTATGTGGATGAGAGACTTGATAAAGGAGATGAAATATCATCCTCACTGCTCAGAGCAATTGAAGGGTCACAAATTTTATTGGTCATATTCTCAAAAGACTATGCTTCATCAAAGTGGTGCTTGGAAGAGCTTGTCAAAATGATTGAATGCATGGAGAGAAATGAACAGATTGTAGTACCTGTTTTCTTCAACGTAAATCCATCACACCTGCGTTACCAATGTGGAGATTATGGAGATGCTTTAGCTAAACATGAAGGAAAATTTAAGGAGAACATGATCAAGATCCAAAGTTGGAGATCTGCTTTGGAAAAAGCTAGTAATTTAAAAGGGTTTCATTATCCAGCAAACTTTGAGGACGAATCTGATCTTATCGATGAAATTGTAAAAGATATTCGGCAAAAGTTGAACAAGTTCTACCCATGTGAATCAAATGGCCTCGTTGGAATTGATAAAAAAGTTGAACAAATTCAGTCATTATTGATATCAGGCTCAAGTGAAGTTCTTTTTCTTGGAATCTGGGGCATGGGTGGCATAGGTAAGACAACAATTGCTCAAGCAATATATGATAAATATTCTCGTCATGATGAATATGATGGTTGTTGCTTTTTGAATGTAAGAGAAGGATTTGAGCAACATGGATTGAGCCTTTTAAGAGAAAAGCTTTTATGTGATCTATTTGAGGGAGAAGGCCTTCGTACAAGTGGCATAAGCAAAGCAAGATTCTTCTCCTCTGCTGGGAGAAGGATGGGTGGGAGAAAAGTCCTAGTTGTGCTTGATGATGTGACTACTTCGGAACAAATAAAATATTTGGTTGGAGAACCAATTTACTTTGGTCAAGGGAGTAGAGTGATCATAACAAGTAGAGATCAGGATGTCCTTACAAGTGGTGGAGTTCACCAAATTTATGAAGTTAAGGAAATGTGCCCTAAAGATTCCCTCAAACTCTTCAACTTACATGCCTTCAAGGAAAGCCAACTCAAAATGGGGTATGAAAAGCTATCTGAAGAGGTAGTTAAAATTGCCCAAGGCAATCCATTAGCTTTAACAGTTTTAGGTTCTGATTTTCATTCTAGAAGTATAGACACATGGGAGTGTGCATTGAGCAAAATCAAGAAGTATCCCAATGAGAAAATTCAGAGTGTGTTAAGATTCAGCTATGATGGACTACATGAAGTAGAGAAAAAGGCATTTCTGGACATTGCATTCTTTTTCAAAGATGATGACAAAGACTATGTCATAAGGCAACTGGATGCTTGGGGTTTTTATGGAGTTTGTGGAATAGAGGTTCTCCAACGAAAAGCTCTACTGACAATTTTAAGTGACAATAGAATACAAATGCATGAGTTGATAAGAAAAATGGGTTGTGAAATAGTTCGTCAAGAATCCATTGAAAGTCCAGGTAGACGCAGCCGATTGAGGGATAGTGAGGACATACATGATATATTGAGATATAATCTGGGAACTGATAAGGTGGAGGCCATGCAAATAGATGTTAATCAAATGACAGATTTACGTTTGAAAGTAGACACTTTTAAAAGCATGCCTCGTCTAAGATTTCTCAAGATTTATCACCCATTGCATGCTGAACTTTCTATGTCAAGTCGTGCACCTGTTTGGTCTCCAGATAAACATGTTGCATTGCTCTTATCAGGGTACGAAGAACTCATGAGTGTTGCAAGCGAGATTCACATAAAATTTCTCCACTACCTTCTTTTTGATGGTTGCTCAGGTCCAAAGGAAATTTCTGTAACATCAAAGGAAATAAGGCAACCAAACATAACACGCCCTAGAATGGAAATAATAATGAACTCATCCATTGGGCACCTCAGCAGTCTTGAATGCTCAGCAGTCGATGTTCAACAATTTAAGAATCTTCCCAATGAGTTACTTTGCTTGAGATCTACATATTACCTTAAGCTTTCTAATAGCAATGGACAAAACACAAAGAAACTCAAGCTGCATATTCTTTTTGATGGCTTAAGGTATTATCAACTCATACCTTTCAGCAAGTTGTGTAACCCAGTTGCAGCACCTCTGAATATTAGTGCTCTTTCATGGTGTCGTGAATTTATTGTGGGAGAAAAAGAAAGCTTGGCAGATTTGCTGAAGGCTTTGCCTTTTGAGACTAAATACACTACTAATTTATTTGTATCTGAACATTTTTAA 2301 0.3759 MASSSSSCHVTDIKHDVFISFRGTDVRKGLLSHLKKELRRRQIHTYVDERLDKGDEISSSLLRAIEGSQILLVIFSKDYASSKWCLEELVKMIECMERNEQIVVPVFFNVNPSHLRYQCGDYGDALAKHEGKFKENMIKIQSWRSALEKASNLKGFHYPANFEDESDLIDEIVKDIRQKLNKFYPCESNGLVGIDKKVEQIQSLLISGSSEVLFLGIWGMGGIGKTTIAQAIYDKYSRHDEYDGCCFLNVREGFEQHGLSLLREKLLCDLFEGEGLRTSGISKARFFSSAGRRMGGRKVLVVLDDVTTSEQIKYLVGEPIYFGQGSRVIITSRDQDVLTSGGVHQIYEVKEMCPKDSLKLFNLHAFKESQLKMGYEKLSEEVVKIAQGNPLALTVLGSDFHSRSIDTWECALSKIKKYPNEKIQSVLRFSYDGLHEVEKKAFLDIAFFFKDDDKDYVIRQLDAWGFYGVCGIEVLQRKALLTILSDNRIQMHELIRKMGCEIVRQESIESPGRRSRLRDSEDIHDILRYNLGTDKVEAMQIDVNQMTDLRLKVDTFKSMPRLRFLKIYHPLHAELSMSSRAPVWSPDKHVALLLSGYEELMSVASEIHIKFLHYLLFDGCSGPKEISVTSKEIRQPNITRPRMEIIMNSSIGHLSSLECSAVDVQQFKNLPNELLCLRSTYYLKLSNSNGQNTKKLKLHILFDGLRYYQLIPFSKLCNPVAAPLNISALSWCREFIVGEKESLADLLKALPFETKYTTNLFVSEHF 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00921 766 Pfam TIR domain 14 189 IPR000157 GO:0007165
Cca11g00921 766 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 10 572 - -
Cca11g00921 766 Pfam NB-ARC domain 195 432 IPR002182 GO:0043531
Cca11g00921 766 PRINTS Disease resistance protein signature 214 229 - -
Cca11g00921 766 PRINTS Disease resistance protein signature 293 307 - -
Cca11g00921 766 PRINTS Disease resistance protein signature 386 400 - -
Cca11g00921 766 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 156 IPR035897 -
Cca11g00921 766 Gene3D - 353 435 IPR042197 -
Cca11g00921 766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 445 IPR027417 -
Cca11g00921 766 Gene3D - 10 179 IPR035897 -
Cca11g00921 766 ProSiteProfiles TIR domain profile. 13 180 IPR000157 GO:0007165
Cca11g00921 766 SMART till_3 14 153 IPR000157 GO:0007165
Cca11g00921 766 Gene3D - 180 346 IPR027417 -
Cca11g00921 766 SUPERFAMILY "Winged helix" DNA-binding domain 422 527 IPR036390 -
Cca11g00921 766 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 572 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00921 Cca-Chr11 19129099 19149740 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00921 15 568 WRKY Transcription Factor Family AT4G12020 32.920 3.00e-64 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00921 - - gmx:100812128 942.569