Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00904 ATGTTTACGTGCATAGCGTGTACGAAGCAAACGACAGATGAGAGGGATGAAGAAGGAGGAGGTCGTGAGAGTGGCACGCCGAGTACAAAAGAAGCCGTCAAAAGCCTGACCACGCAGATAAAGGATATGGCATTGAAGTTTTCAGGCGCTTACAAGCAATGCAAACCCTGCACAGGGTCCAGTAGCTACAAGAAAGGACATAGACCATATCCAGACTTTGATACCATCTCAGAAGGGGTTCCATACCCTTATATAGGAGGTGGTGCAAGCTCAAGTTCAACCCCTGCATGGGACTTCACAACCTCTCACTACCCTGGTGGTAGATCTGACCCAAGATTTGCTGGGGCATTTGGTGGTGACCGCACTCCTAGAGGACGTGACTCAGCATCAGTTTGTGATGTAGTCTTGgaggatgaggatgagcctaaggagtggatgGCACAGGTGGAGCCAGGGGTTCACATTACGTTTGTTTCTCTTCCTAATGGAGGAAATGATCTTAAAAGAATTCGTTTCAGCCGAGAGATGTTTAATAAATGGCAAGCTCAAAGATGGTGGGGTGAGAATTACGACAGAATCATGGAACTTTATAACGTCCAGAGATTTAATCGACAAGCTCTTAACACTCCTCCAAGGTCTGAGGATGAGCAAAGAGATTCTTCTTTCTCAAGATTGACATCTGCACAAGAAAGCCCGATGCCCTCAAACAAGGATTGGACACCAAGGAGTCACTATAAACCCTCTGGGGCTGGGAGCAGAGGATATTACCCCTCTGAACCGTTGGATCACGGTGGAGGTGGTGGCCACTTCCATGCAGGGCCGTCTATGGAACCAGCAAGGGACACTACTGCTTCTAGGGATGAGCCTTCTATCAGCAATGCCAGTGAAATGGAGACAGAATGGGTAGAACAAGACGAGCCTGGAGTTTACATTACAATCAGACAGTTAGCTGATGGGACAAGGGAGCTACGACGTGTCAGATTCAGCCGGGAAAGATTTGGGGAGGTGAATGCAAAAACTTGGTGGGAAGAGAATAGAGAGAGAATACAAGCTCAATACCTTTGA 1065 0.4629 MFTCIACTKQTTDERDEEGGGRESGTPSTKEAVKSLTTQIKDMALKFSGAYKQCKPCTGSSSYKKGHRPYPDFDTISEGVPYPYIGGGASSSSTPAWDFTTSHYPGGRSDPRFAGAFGGDRTPRGRDSASVCDVVLEDEDEPKEWMAQVEPGVHITFVSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFNRQALNTPPRSEDEQRDSSFSRLTSAQESPMPSNKDWTPRSHYKPSGAGSRGYYPSEPLDHGGGGGHFHAGPSMEPARDTTASRDEPSISNASEMETEWVEQDEPGVYITIRQLADGTRELRRVRFSRERFGEVNAKTWWEENRERIQAQYL 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00904 354 PANTHER BREVIS RADIX-LIKE PROTEIN-RELATED 1 354 - -
Cca11g00904 354 MobiDBLite consensus disorder prediction 207 303 - -
Cca11g00904 354 MobiDBLite consensus disorder prediction 10 32 - -
Cca11g00904 354 MobiDBLite consensus disorder prediction 222 242 - -
Cca11g00904 354 ProSiteProfiles BRX domain profile. 143 198 IPR013591 -
Cca11g00904 354 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 354 IPR044532 -
Cca11g00904 354 Pfam Transcription factor regulating root and shoot growth via Pin3 143 197 IPR013591 -
Cca11g00904 354 Pfam Transcription factor regulating root and shoot growth via Pin3 298 353 IPR013591 -
Cca11g00904 354 MobiDBLite consensus disorder prediction 10 24 - -
Cca11g00904 354 Pfam Transcription factor BRX N-terminal domain 24 57 IPR027988 -
Cca11g00904 354 ProSiteProfiles BRX domain profile. 299 354 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00904 Cca-Chr11 18487440 18494814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00904 1 354 Major Intrinsic Protein MIP AT1G31880 68.044 7.14e-170 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00904 - - ccaj:109789470 719.924