Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00901 ATGGAGAAAACAAGGCCCTCAGACCAAGTTGTCATCACCCTCGACCAGCATATACCTAAACCATCCTCCATGGAGACCCAAAATCTTGAGGAGAAACCCAAACTCCCCTTAAGAGCCCAAACCCTTAACCGTCTCAGCTTCTCAAAACCCAAATCCCGAATCCTAGAATACAACTATGCCCCCCGCAACAAACTCTTTGCCACCTCCGAAGAAGGTGACCTCATTCAACCCACCTACAAGCTATCTTCCAACGAGGAAGACGATGATGAGGATTGGGAGTGGGACAAAGAAGAAACGGAGGAGGATGGGTCAGAGCACGACCCCAAGTTGCACCAAAAGAGGAAGTTCAAAGTGAAGTGGAGGCTCTTGGTGGAGTGGGTTTTGTTCCTCAACATATTGACATGCTTGGTGTGTTCTTTGACTATATCTTCCATAACCAACATGCACCTGTGGGGTTTGGAGATTTGGAAGTGGTGTTTGATGGTAATGGTCACATTTAGTGGCCGTTTGGTTTCAGGTTGGGTGGTTGGTGTAACGGTTTTCATGATCGAGCGCAACTTCATGCTACGAGAGAAGGTGCTGTACTTCATCTACGGTCTCCGAAACAGCATAAGAAACTGTCTCTGGTTGGGCCAGGTCCTACTCTCCTACTGGAGCGTGGTCTTCGACGACGTCCAAAAGAAGAACCACAAGTTCCTCAACAAGGTCTTCCAGGCCTTGGTGGCGGTCCTAGTGGGCGCCACCATATGGCTGGTCAAGATCGTGCTGGTCAAAATGCTCGCCTCCTCCTTCCACGTCACCACCTACTTCGACAGAATGAAGGAGAGCGTCTTCCATCACTACATTCTAGACACTCTCTCGGGCCCTCCCATGGAGGACGCCGAGGAGATACTCCTCCAGCACTGCCTCGCCGGGTCCAAGTCGATGCCGGCGAGGCGGAACAAGCTGAAGGAGGCCAGGAACTTGTACAAGTCCAACAAGTTCGGGTCCAGGAGGATTGACATGGAGAAGCTGAGGGAGCTGAGCATGGAGAGCACTGCGTCCGCGTGGAGCGTCAAGAGGCTTGTCAACTATGTTAGGTCTTCGGGCTTGTCCACCATTTCAAGGACTGTGGATGATTTTGGCAACGCCGAGTCTGAGATTAGTAGTGAGTGGGAAGCTAGAAACTGCGCCCAGAGGATTTTCAAGAACGTTGCCAAACCTGGGGCCAAGTATATTGAAGAGGAGGATCTGATGAGATTTTTGAAGAGGGTTGAGATTCATACCATATTTCCACTGATTGAAGGTGCTCTTGAAACGGGCAAGATCAGCAGGTCTTCATTTAGAAATTGGGTGATTAGAGCATATTATGAAAGAAAAGCCCTAGCACAATCACTGAATGATACGAAAACAGCAGTGCAGCAGCTTCACAAAATAGCAAGTGGAATTGTTAGTGTGATAATAATCATAGTGATGCTTTTGGTGATGGGGGTGGCTACGCTGAAGATTATATTATTCTGTATTACACAAACAGTTTTGATAGGTGTTGCCTTCCAAGGCACTTGCAAGACTGTATTGGAGGCCATCATCTTTGTCTTCGTCATGCACCCTTTTGATATTGGAGACCGCTGCGTCATTGATGGAGTTCAGATGATTGTGGAAGAGATGAATATCTTGACGACGGTGTTTCTTCGATATGACAATGAGAAAATATACTACCCAAACGCAGTTTTGCTCAATAAGCCAATAAGCAATTTCTATAGGAGTCCAGAGATGTGGGATTCAATTGATTTCACCATTGATGTCTCAACTCCCATGGAGACCATCCTTTCACTCAAGAAATCCATGCAAATCTACATTGAGAGCAAGCCAAAGTATTGGAATCCAAAACACAGTATGATAGCAAAGGGAATTGATAACGTGGACAAGATAAAGTTGTGCTTATCTGTGCAACATACGATCAACCATCAGAACTACGGTGAGCGAAACGTTAGGATAACGGAGCTACTCTTGGAAATGAAGAAGATCTTTGAGATCCATGGTGTCAAGTACAGTCTTCTTCCTCAGGAGATCCAGATTACCCATATGAACATTGAAAATGGGAAAGTTCTGTTTCAATCATGA 2103 0.4655 MEKTRPSDQVVITLDQHIPKPSSMETQNLEEKPKLPLRAQTLNRLSFSKPKSRILEYNYAPRNKLFATSEEGDLIQPTYKLSSNEEDDDEDWEWDKEETEEDGSEHDPKLHQKRKFKVKWRLLVEWVLFLNILTCLVCSLTISSITNMHLWGLEIWKWCLMVMVTFSGRLVSGWVVGVTVFMIERNFMLREKVLYFIYGLRNSIRNCLWLGQVLLSYWSVVFDDVQKKNHKFLNKVFQALVAVLVGATIWLVKIVLVKMLASSFHVTTYFDRMKESVFHHYILDTLSGPPMEDAEEILLQHCLAGSKSMPARRNKLKEARNLYKSNKFGSRRIDMEKLRELSMESTASAWSVKRLVNYVRSSGLSTISRTVDDFGNAESEISSEWEARNCAQRIFKNVAKPGAKYIEEEDLMRFLKRVEIHTIFPLIEGALETGKISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKIASGIVSVIIIIVMLLVMGVATLKIILFCITQTVLIGVAFQGTCKTVLEAIIFVFVMHPFDIGDRCVIDGVQMIVEEMNILTTVFLRYDNEKIYYPNAVLLNKPISNFYRSPEMWDSIDFTIDVSTPMETILSLKKSMQIYIESKPKYWNPKHSMIAKGIDNVDKIKLCLSVQHTINHQNYGERNVRITELLLEMKKIFEIHGVKYSLLPQEIQITHMNIENGKVLFQS 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00901 700 Gene3D - 530 579 IPR023408 -
Cca11g00901 700 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 4 698 - -
Cca11g00901 700 SUPERFAMILY Sm-like ribonucleoproteins 521 579 IPR010920 -
Cca11g00901 700 MobiDBLite consensus disorder prediction 84 101 - -
Cca11g00901 700 Pfam Mechanosensitive ion channel 471 676 IPR006685 GO:0016020|GO:0055085
Cca11g00901 700 MobiDBLite consensus disorder prediction 77 108 - -
Cca11g00901 700 PIRSF Memb_At2g17000 15 697 IPR016688 -
Cca11g00901 700 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 4 698 IPR016688 -
Cca11g00901 700 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00901 Cca-Chr11 18376922 18387690 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00901 20 690 Mechanosensitive Ion Channel Family AT5G12080 41.761 0.0 547
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00901 K22048 - gmx:100813521 1192.18