Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00895 ATGGAGTCTGGTCAGAACGAGCGTGTGAAGATTCGTGAGTTTTGCACGAGTGGAACTTGCATGAAAGCAACAGAAGTTGAGGCCAAGCTTGATGAAGGAAATATTCAAGAAGCAGAAACTGCATTGCGTGAAGGGTTGTCAATAAATTCTGAGGAAGCAAAGGCTCTTCTTGTAAAGTTAGAGTACCAGAGAGGCAATGTTGAAGGCGTTCTTCGTGTATTTGATGGGATTGATGTTGAGGCAACCATACAACAACTTCAATCTTATCTTTCTGAAAAAACTTCTGCTAAGAAAGGTTCTTCCTCAGGATCCCAGCAAGTTGTTAGTTTGGGGATTGAAGCCATTTACTTAAAAGCCAAATCTCTACAAAAACTGGGCAAATTTACCGATGCTGCTAATGAATGCAAGCAAGTTCTTGATGTTGTTGAGAAGATATATGGTCAGGGTATAGTTGATTCACAAGTGGACAATAAAATACAAGATGTAATCAGCCATACAGTAGAGCTCTTTCCAGAGCTGTTGAAACATGCTGGTTGCTATGATGAGGCACTGTCTGCTTATAGGAATGGCCTTCTAAGTCAATGGAACCTTGATAATGATTGTTGTGCAAGAATTCAAAAGGCACTTGCTGTGTTTTTGTTGTACACAGGGATGGAGGCAACTCCACCCAGTTCAACCGTTCAGGTTGATGGGTCTTATATACCTAAAAATAACTTGGAAGAGGCAATTTTGCTTCTCATGATATTTTTGAGGAACTTCAGCCTTAGTAAGATAAAGTGGGACCCTTCAGTTATGGAACACCTAACAGTTGCACTTTCAGCATGTGGTCAAACTTGTCTTTTAGCAAAGCTACTTGAAGAGTTAACACCCGGTGTATACCATCGCATTGACCGTTGGAATTTTTTAGCTCTATGTCATAGTGGAGCTGGACAAAACAAAAGTGCTTTGAATTTGCTAAGGTTGTCTTTGCATAAACATGAACGACCAAATGACCTTACATCGTTGCTGTTGGCTGCAAAGATTTGTAGTGAGGACCCTTATGTTGCTGCTGAGGGAGCAGGATATGCTCAGAGGGCAATCAACAATGCTGAAGGCTTAGATGAGCATTTGAAAGGTGTGAGTCTTCGAATGTTGGGACTTTGCCTGGGAAAGCAAGCTAAGGTTTCTTGCTCTGACTACGAGAGGTCTTTGCTTCAATCCAAAGCTCTACAATCATTGGAGGAGGCAATGAGAATGGAGAAAAACAATTCTGATCTAATATTTGAATTGGCTATTCAATATGCTGAGCACCGAAATTTAACGTGTGCATTATCATGTGCCAAACAGTTCTTTGACAAAACTGGTGGCTCTAAATTGAATGGTTGGAGATTGCTTGCTCTTGTTTTGTCTGCACAAAAAAGATTTTCCGAGGCTGAAGTGGTGACTGATGCTGCTTTAGATGAGACTGCAAAATGGGAGCAAGGGCCACTACTTAGGCTCAAAGCCAAGCTCAAGATCTCCCAATTACGACCCATGGATGCTATTGAAATTTATCGCTACCTTCTTGCATTGGTTCAAACCCAGAAGAAATCATCTGGGCCTCTCAAACTTGGTTCGCAGGTTGAGGATTATACAATAAATGAATTTGAAGTTTGGCATGGTTTGGCAAATTTATATGCAAGTCTTTCTCATTGGAAGGATGGCGAAATATGCTTGCAAAAGGCTAGAGAGTTGAAGGAATACTCGGTAGAAACAATACACATTGAAGGTATTATATTTGACGGTCGTGGAGAAAAACAAGAAGCTCTTATTACTGCTGCTAATGCAGTGCTATTTGAACCAAACTATGTGCCAAGCAAGATCTTAATGAGTTCTTTGATGATGAAAATGGGTTTTGAAGCTTCACCTTTTGCTAGAAGCTTACTTTCTGATGCCCTTAGAATAGAACCCACAAATCGCATGGCTTGGTATTACTTGGGATTAACTCACAAAAATGATGGTCGAATAGTTGATGCTGCTGATTGCTTCCAGGCAGCTTCCATGCTTGAAGAAACCGATCCCATTGAAAGTTTCAATTGTATGCTTTGA 2067 0.4074 MESGQNERVKIREFCTSGTCMKATEVEAKLDEGNIQEAETALREGLSINSEEAKALLVKLEYQRGNVEGVLRVFDGIDVEATIQQLQSYLSEKTSAKKGSSSGSQQVVSLGIEAIYLKAKSLQKLGKFTDAANECKQVLDVVEKIYGQGIVDSQVDNKIQDVISHTVELFPELLKHAGCYDEALSAYRNGLLSQWNLDNDCCARIQKALAVFLLYTGMEATPPSSTVQVDGSYIPKNNLEEAILLLMIFLRNFSLSKIKWDPSVMEHLTVALSACGQTCLLAKLLEELTPGVYHRIDRWNFLALCHSGAGQNKSALNLLRLSLHKHERPNDLTSLLLAAKICSEDPYVAAEGAGYAQRAINNAEGLDEHLKGVSLRMLGLCLGKQAKVSCSDYERSLLQSKALQSLEEAMRMEKNNSDLIFELAIQYAEHRNLTCALSCAKQFFDKTGGSKLNGWRLLALVLSAQKRFSEAEVVTDAALDETAKWEQGPLLRLKAKLKISQLRPMDAIEIYRYLLALVQTQKKSSGPLKLGSQVEDYTINEFEVWHGLANLYASLSHWKDGEICLQKARELKEYSVETIHIEGIIFDGRGEKQEALITAANAVLFEPNYVPSKILMSSLMMKMGFEASPFARSLLSDALRIEPTNRMAWYYLGLTHKNDGRIVDAADCFQAASMLEETDPIESFNCML 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00895 688 Gene3D Tetratricopeptide repeat domain 450 610 IPR011990 GO:0005515
Cca11g00895 688 PANTHER PROTEIN NPG1 1 687 IPR043376 -
Cca11g00895 688 SUPERFAMILY TPR-like 113 436 IPR011990 GO:0005515
Cca11g00895 688 PANTHER CALMODULIN-BINDING PROTEIN 1 687 - -
Cca11g00895 688 SMART tpr_5 452 485 IPR019734 GO:0005515
Cca11g00895 688 SMART tpr_5 646 679 IPR019734 GO:0005515
Cca11g00895 688 SMART tpr_5 296 329 IPR019734 GO:0005515
Cca11g00895 688 SMART tpr_5 112 145 IPR019734 GO:0005515
Cca11g00895 688 SMART tpr_5 542 575 IPR019734 GO:0005515
Cca11g00895 688 SMART tpr_5 576 609 IPR019734 GO:0005515
Cca11g00895 688 SUPERFAMILY TPR-like 401 680 IPR011990 GO:0005515
Cca11g00895 688 Gene3D Tetratricopeptide repeat domain 23 443 IPR011990 GO:0005515
Cca11g00895 688 Gene3D Tetratricopeptide repeat domain 621 684 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00895 Cca-Chr11 18197468 18203461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00895 2 688 Calmodulin-binding Proteins AT2G43040 66.523 0.0 907
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00895 K21843 - gmx:100811897 1122.46