Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00888 ATGGTTAAGCATAACAACGTGATCCCAAATGGGCACTTCAAAAAGCACTGGCAAAACTATGTGAAGACTTGGTTTAATCAACCAGCAAGGAAGACCAGAAGACGGTTAGCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCCAGGCCAACTGGTGGACCTCTGAGGCCTGTTGTTCACGGTCAAACTTTGAAATACAACATGAAAGTAAGAGCTGGGAGAGGATTTTCTCTTGAAGAGTTGAAGGCTGCTGGTATTCCCAAAAAACTTGCTCCAACTATTGGCATTGCTGTTGATCATCGCCGCAAGAATCGTTCTTTGGAGAGTATGCAGGCTAATGTGCAGAGGCTGAAAACTTATAAGGCCAAGTTGGTTGTGTTCCCAAGACGGGCACGCAAGGTCAAGGCTGGTGATTCTAGCCCTGAAGAACTGGCAAATGCCACTCAAGTTCAGGGTCCATTCTTGCCCATAGTGAGGGAGAAGCCATCTGTTGATCTTGTTAAGGTAACAGATGAAATGAAAGCATTCAAAGCATATTATAAGCTTCGTCTGGAACGCACCAACAAACGCCACTATGGTGCCCGCCTAAAGAAAGCTGCTGAAGCTGAAAAAGAAGATAAGAAATGA 624 0.4535 MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTGGPLRPVVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRRKNRSLESMQANVQRLKTYKAKLVVFPRRARKVKAGDSSPEELANATQVQGPFLPIVREKPSVDLVKVTDEMKAFKAYYKLRLERTNKRHYGARLKKAAEAEKEDKK 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00888 207 Hamap 50S ribosomal protein L13e [rpl13e]. 45 128 IPR001380 GO:0003735|GO:0005840|GO:0006412
Cca11g00888 207 Pfam Ribosomal protein L13e 7 185 IPR001380 GO:0003735|GO:0005840|GO:0006412
Cca11g00888 207 ProSitePatterns Ribosomal protein L13e signature. 70 84 IPR018256 GO:0003735|GO:0005840|GO:0006412
Cca11g00888 207 PANTHER 60S RIBOSOMAL PROTEIN L13 1 207 IPR001380 GO:0003735|GO:0005840|GO:0006412
Cca11g00888 207 PANTHER 60S RIBOSOMAL PROTEIN L13 1 207 - -
Cca11g00888 207 Gene3D - 167 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00888 Cca-Chr11 18039810 18042103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00888 2 192 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 87.435 1.24e-126 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00888 K02873 - gmx:100805957 380.563