Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00882 ATGATTTATGTTGATTATGCTTATTTCTGCCCTCATCAAGTGTTTTCTTCTGAATGTAGGTTGGAGCGCAACACTGTGAAGAGGAAAAGGGTTTTTGCTACCTTAAAGGTTTTGGGGACAGTACTTGAGCAGTTGAGTAAAGAAATTCCTGATGAGGTTCAAGCAGCTGTTTCAGCTTTGAAGTATTACAGTGGCTTGCCAGAGTTGCCTAGGGGCTATTTCATTCCTCCTACAAGGAATGCTAACATGTTCGATTTTTTGCAGTGTACTTTTGGATTTCAGGTCTATATACAGGGGTTTCCATGTGTTGCCAAGTCAAATTTGGTGTGA 330 0.4061 MIYVDYAYFCPHQVFSSECRLERNTVKRKRVFATLKVLGTVLEQLSKEIPDEVQAAVSALKYYSGLPELPRGYFIPPTRNANMFDFLQCTFGFQVYIQGFPCVAKSNLV 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00882 109 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 52 94 - -
Cca11g00882 109 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 20 53 - -
Cca11g00882 109 PANTHER BNAC03G35120D PROTEIN 20 53 - -
Cca11g00882 109 PANTHER BNAC03G35120D PROTEIN 52 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00882 Cca-Chr11 17849572 17850648 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00882 21 94 Cell Wall Biosynthesis AT3G07160 49.550 1.05e-24 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00882 K11000 - ccaj:109806050 226.098