Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00872 ATGGATCCTGGTCGCTATGCTCTGCATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGATACGGCACGGTCCACGAGCCAAACTTCCGGGTCGGTGGTTCCTATGATGAAAGAAGGTTTATAGATGATAGATATCCAAGGGACGCGGTTTACCAGAGAAATAATTTCCCCCGTGACATTTTGGATAGGGATGCCTATCTGCCGCCTGGACCACCTGTTGGCCACTGGAGTCAATCCAAACGGAGAGGTTATGATGAAGATTATCCACTTGACAGGGAATCTAGACGTTTGCAGAGGCCCTATCATGAAACATATAATCAGATTGATGGTTTCAGGGATCGTGAGATTGACGCTTACCCAGAATATGAAAGGTTCCGTGATGGCTATACCAGCATTGAAACTTATGGTGATCGAGGATATGATAAAACTTCCAGGTTTGTAGGACATGACCGTGATGATTATGCATATGATGATTATGACTACAAGTCTCGGGCTTCCTCTCATCATCGTAGGGAGGATAGCCATGAGAGGGATTATGATCATGGTCGACATAGTTATGATTCTGATTATGAAAGAGGTAGTAGAAGAGATAGTAATTGGAGGCGACGGGAATCACGTGATCGAGAGCGAGATAAGAAGGGTCATAGTCGGGAAAGAGATCTGACTCCACATAGGAAGCATGACcgttctcgttcacattctcgttctcgttctcgatcccgctccaattctcattcccaatcccgatctcaatcacgtGGATATGATGACCACCCAAGATCTAGGTCTCCACGAGGTCGAAGCCATGGTCGAAATTATAGGGAGGATAGCTATTCTGACAGTCGATATGATAAAAGTGAAAGGCGTAGGGATCGTGATGATAAACGTCAGAGGGAGCATTATTCTGTGGCCCCATCTGCAACTGTTGTTGTGAAAGGTCTTTCACAGAAGACAACTGAAGAAGATCTATACCAAATCCTTGCTGAATGGGGCCCTCTTCGCCATGTTCGCGTTATAAAGGAGAGAAGTTCTGGGATCTCTCGTGGATTTGCATTTATTGATTTTCCTTCTGTGGGAGCTGCACAAGGAATGATGGACAAACTAGGAGATGATGGTCTTGTTGTGGATGGCAGAAAACTTTTCTTTGAATATAGTAGTAAGCCAACTGGAGGTCCTGGTCCAGATGGAGCTATGAAATCAGGTCATAATTACAAGAGCATTACGGTTCCATCTGATTGGATGTGCACTATTTGTGGTTACATAAATTTTGCACGCCGAACTTCCTGCTATCAGTGTAATGAGCCACGGACTGATGATGCTCCTGCAGCAGATATTTCATTATCAAATTCAGCAGCTATAGGAAAGAAAGGTTTGGAGGCAGGTCCAACACATGTTTTGGTTGTCCGCGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCTAAACATGCTCCAATTAAGGATCTGCGTCTTGTAAGAGACAAGTTTACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCGGTGGAGGATGCTACCAAAGCTCTTGAGGCAACAAATGGAACTATGCTTGAAAAGAATGGGCAGATTCTAAGAGTGGCCTATGCAAAAAGTATTCTGGGTCCTGGATCAGGAACATCGGGAACTTCCCAATCAAGCAGTCTTGCAGCTGCTGCTATTGAGGCTGCAACATTTGCCCAACAGTATGATTCTGTGGGATGGGCTCCAAAAGAATACAATCCAGATGACAAACAATCTACTGGTCAAGAGCAAACTGGCACAGAAGTTGGTGCTCCACAATCAGGCTTTGTTTGGGATGAAGCATCGGGTTATTACTATGATGCCGCTTCTGGGTTTTACTATGATGGAAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACCACCAAACTCAGCAGTACATACCTTGCACTGATCAAAATCAGAATAAAACATCTAATAGCGAGTCTGAACATTCTAAGGCGTCTGATGGTTCCGGAAGTAAAAAGGTCATTTCTGCACCAGCTACTACTGTTACATCAGTTGAGAAGCCAGCTTCATTGGCAGATGCTGTTCAGGCTGCAGCAACTGCCGCGTTAGCTGCAGAGAAGAAAGAAAAAGAAAAATCAAAGGAAATAAAACTTGCCTCAAAAAGCAGTATTCTGGCAAACAAGAAAAAAATGAACAATGTGTTGACAATGTGGAAGCAGAGAAGCCATGAGGGGCAGGCTACTCGAGTGGCTCTGGAAGACAATCAACCTTCTGTTTCAGCTGATGATAGGTCATATTCTTCTGGAAATTCTGCAAAGAATAAGTTAAAAAATGAGACTATGATAAGGGAAAGTAATGCCTCTAATCTAGGAATTCATACAACTCTTGCCCAGGCTGCTGGTATTGATTCTCAGGCACAGCCACGGCCTGTTAGTAATAGCCTTGGAGGCACTGTGATGGGGGTTATAAGGGGCTCAGGAAGAGGGCTTGTTAAGCCAGATACTTATTCAGTTTCTACATCTGTTGCATCATCTGTGCCAAGTTCATCTTCAGCAAATGTTGATGCGCAGACAGTTGCTACTCCCTTTAGAACAGATGTATCTGCCCTGGGTTCATATACACCATCTGCGACTGTTGGAAGTGGTCGAAGAAGATTTTCAGAAATGCCTCATTCTGCTTCAACTCACAAGGAACAACCTCAAACAACTTACAGAGATCGTGCAGCTGAGAGGAGGAGTTTGTATGGCTCATCTTCTTCAGTTGGAAATGATTTTGCTGATCTTGAAATTGGGGATTCAAGTAAGACTACTTAA 2838 0.4249 MDPGRYALHQGWDNNSALEGYGTVHEPNFRVGGSYDERRFIDDRYPRDAVYQRNNFPRDILDRDAYLPPGPPVGHWSQSKRRGYDEDYPLDRESRRLQRPYHETYNQIDGFRDREIDAYPEYERFRDGYTSIETYGDRGYDKTSRFVGHDRDDYAYDDYDYKSRASSHHRREDSHERDYDHGRHSYDSDYERGSRRDSNWRRRESRDRERDKKGHSRERDLTPHRKHDRSRSHSRSRSRSRSNSHSQSRSQSRGYDDHPRSRSPRGRSHGRNYREDSYSDSRYDKSERRRDRDDKRQREHYSVAPSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSVGAAQGMMDKLGDDGLVVDGRKLFFEYSSKPTGGPGPDGAMKSGHNYKSITVPSDWMCTICGYINFARRTSCYQCNEPRTDDAPAADISLSNSAAIGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTMLEKNGQILRVAYAKSILGPGSGTSGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKQSTGQEQTGTEVGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDHQTQQYIPCTDQNQNKTSNSESEHSKASDGSGSKKVISAPATTVTSVEKPASLADAVQAAATAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQPSVSADDRSYSSGNSAKNKLKNETMIRESNASNLGIHTTLAQAAGIDSQAQPRPVSNSLGGTVMGVIRGSGRGLVKPDTYSVSTSVASSVPSSSSANVDAQTVATPFRTDVSALGSYTPSATVGSGRRRFSEMPHSASTHKEQPQTTYRDRAAERRSLYGSSSSVGNDFADLEIGDSSKTT 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00872 945 CDD OCRE_SUA_like 603 655 IPR035623 -
Cca11g00872 945 SMART rrm1_1 465 540 IPR000504 GO:0003723
Cca11g00872 945 SMART rrm1_1 308 383 IPR000504 GO:0003723
Cca11g00872 945 MobiDBLite consensus disorder prediction 61 85 - -
Cca11g00872 945 Pfam OCRE domain 606 654 IPR041591 -
Cca11g00872 945 SUPERFAMILY Ran binding protein zinc finger-like 404 439 IPR036443 -
Cca11g00872 945 MobiDBLite consensus disorder prediction 138 227 - -
Cca11g00872 945 MobiDBLite consensus disorder prediction 656 682 - -
Cca11g00872 945 PANTHER RNA-BINDING PROTEIN 222 924 - -
Cca11g00872 945 MobiDBLite consensus disorder prediction 582 606 - -
Cca11g00872 945 CDD RRM1_RRM2_RBM5_like 462 542 - -
Cca11g00872 945 SMART zf_4 411 435 IPR001876 -
Cca11g00872 945 MobiDBLite consensus disorder prediction 133 304 - -
Cca11g00872 945 MobiDBLite consensus disorder prediction 921 945 - -
Cca11g00872 945 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 368 IPR000504 GO:0003723
Cca11g00872 945 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 466 532 IPR000504 GO:0003723
Cca11g00872 945 ProSiteProfiles Zinc finger RanBP2 type profile. 409 438 IPR001876 -
Cca11g00872 945 Gene3D - 407 439 - -
Cca11g00872 945 PANTHER RNA-BINDING PROTEIN 38 217 - -
Cca11g00872 945 MobiDBLite consensus disorder prediction 877 945 - -
Cca11g00872 945 SUPERFAMILY RNA-binding domain, RBD 462 551 IPR035979 GO:0003676
Cca11g00872 945 MobiDBLite consensus disorder prediction 752 781 - -
Cca11g00872 945 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 464 544 IPR000504 GO:0003723
Cca11g00872 945 CDD RRM1_RRM2_RBM5_like 305 385 - -
Cca11g00872 945 ProSitePatterns Zinc finger RanBP2-type signature. 413 432 IPR001876 -
Cca11g00872 945 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 387 IPR000504 GO:0003723
Cca11g00872 945 MobiDBLite consensus disorder prediction 228 242 - -
Cca11g00872 945 Gene3D - 451 602 IPR012677 -
Cca11g00872 945 Gene3D - 270 406 IPR012677 -
Cca11g00872 945 SUPERFAMILY RNA-binding domain, RBD 303 401 IPR035979 GO:0003676
Cca11g00872 945 PANTHER FI21118P1 222 924 - -
Cca11g00872 945 PANTHER FI21118P1 38 217 - -
Cca11g00872 945 MobiDBLite consensus disorder prediction 251 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00872 Cca-Chr11 17564239 17572060 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00872 306 528 Eukaryotic Initiation Factors Gene Family AT2G36660 25.200 1.85e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00872 K13094 - gmx:100777686 1552.34