Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00871 ATGGAAGAAGAGCAAGAGATTCAGCATCATAGGGAAAAGGAAAATCAAGGGTCTCTGGCTTCTGGGGACAACAATGAGCATCGTTCTTTCATGTGCCAAATCTGCAACAAAGGATTCAGCTCAGGTAAAGCTCTTGGTGGACACTTGAGAATACACAACGTCTCTAGGAAGCAATTGAGTAGAGCCAACCAAGGTGTTACAAAACCCAAAACCAAGAACAAATGGGTGTTGGTGAGTGGCAACAACCCCACTTGTGCCCTTTGTGGGAAGAGTTTCTGTTCCATGAAGTCCTTGTTTGGGCACATGAGATCTCACCCTGAGAAATTGAGGAGGGGGATTCAAAGCATCATTCATAACAATGGTGCGTCCTCCAATTCCACATGTTCCTCGACCCTCTCTGATGACTCTGCTGTTGATCTTTCTCAAACCCTCAGTGGTTGGTCTAAGACTGCCAAGAGAGGCCGCAAAAGCCCCTCTTCTAGCAATGCAAATTCTGGGTTAGAAGATGATGGGATTGAAGAGCGTATGCAAGAGGCTGTGTATGAGCTCATGTTGCTGGCGAGTGGGGATCCTAAGAGGGAGGAAGAGCTTCATGGTGATCAGATTCAAGAGAAGCCATTGAACTGTGAAAAGGGGTTGCTGTTGTTAAAGCCAGATTTTGGGAATTCTGGTGTCAAGAAGATATATAGAAAGAAAGGGGCAAAGAAAATGAAATCAATAGAATTAGAAGCAGCTGAGGAGGAGAACAAGCTGGTTAGAAGCGGATTATGCAACACCACTTTCTCAAGTCACCAAGCTTTGGAGGGTCATCTATGCAGTCATGAAAATTCTAAGAACATCGAAGTTATGGAGGAGTCCGAATCTGTGTCTGCCACAGGGGACAGAACAACCATGCAAGGGAATGAAACAGGAACTGTTCTTGGGGGCTGTGCTGTGGAAGCCATGAGAGGGTATCAATGTAAAATTTTCAACAAGACTTTTTCAATTGGTCCAGCATTTGGGGACCACAAGGGATCTCATTGGACAGGCATGGCAGAAGCTCAGTCAGCTCAAGAAACTTCTTCACTTGTGGAAAATGGACAGAATTGTTCCAAGGTTTTGGCTTTTGATCTTAATCAGCCTCCAGCTATTTTGGATGAGGAAGACGGTGTTCAATCAGACTTATTTGTCTCTGTCAATATTATGGCATCATCCAGTTATAATTCTTCCTTCTAA 1215 0.4444 MEEEQEIQHHREKENQGSLASGDNNEHRSFMCQICNKGFSSGKALGGHLRIHNVSRKQLSRANQGVTKPKTKNKWVLVSGNNPTCALCGKSFCSMKSLFGHMRSHPEKLRRGIQSIIHNNGASSNSTCSSTLSDDSAVDLSQTLSGWSKTAKRGRKSPSSSNANSGLEDDGIEERMQEAVYELMLLASGDPKREEELHGDQIQEKPLNCEKGLLLLKPDFGNSGVKKIYRKKGAKKMKSIELEAAEEENKLVRSGLCNTTFSSHQALEGHLCSHENSKNIEVMEESESVSATGDRTTMQGNETGTVLGGCAVEAMRGYQCKIFNKTFSIGPAFGDHKGSHWTGMAEAQSAQETSSLVENGQNCSKVLAFDLNQPPAILDEEDGVQSDLFVSVNIMASSSYNSSF 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00871 404 MobiDBLite consensus disorder prediction 147 167 - -
Cca11g00871 404 SMART c2h2final6 318 340 IPR013087 -
Cca11g00871 404 SMART c2h2final6 30 52 IPR013087 -
Cca11g00871 404 SMART c2h2final6 256 274 IPR013087 -
Cca11g00871 404 SMART c2h2final6 83 105 IPR013087 -
Cca11g00871 404 Coils Coil 230 250 - -
Cca11g00871 404 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Cca11g00871 404 Gene3D Classic Zinc Finger 2 108 - -
Cca11g00871 404 Pfam C2H2-type zinc finger 30 52 - -
Cca11g00871 404 Pfam C2H2-type zinc finger 85 107 - -
Cca11g00871 404 Pfam C2H2-type zinc finger 257 275 - -
Cca11g00871 404 MobiDBLite consensus disorder prediction 1 24 - -
Cca11g00871 404 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 5 290 - -
Cca11g00871 404 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 317 380 - -
Cca11g00871 404 SUPERFAMILY beta-beta-alpha zinc fingers 28 105 IPR036236 -
Cca11g00871 404 MobiDBLite consensus disorder prediction 147 171 - -
Cca11g00871 404 MobiDBLite consensus disorder prediction 1 17 - -
Cca11g00871 404 ProSitePatterns Zinc finger C2H2 type domain signature. 32 52 IPR013087 -
Cca11g00871 404 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 105 IPR013087 -
Cca11g00871 404 ProSiteProfiles Zinc finger C2H2 type domain profile. 30 57 IPR013087 -
Cca11g00871 404 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 317 380 IPR044653 GO:0003700
Cca11g00871 404 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 5 290 IPR044653 GO:0003700
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00871 28 114 C2H2 Transcription Factor Family AT2G26940 38.095 1.35e-13 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca11g00871 zf-C2H2_6 2.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00871 - - gmx:102667003 459.144