Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00870 ATGACAGTCCTTCGTGTTTTGCTCTTTCTGGGACTCTTGTGGGCTCAAATTCATCTCATTTCTTCATTCACTGATCCTAAAGACGTTGTTACGCTTCGATCATTAAAAGATGTATGGCAAAACACACCACCCAGCTGGGACAAATCAGATGACCCCTGTGGAGCACCCTGGGAAGGAGTGACCTGCAACAAATCAAGGGTTACTGCATTGGGACTGTCAACCATGGGCTTGAAGGGTAAATTAAGTGGAGATATTGGTGGACTTACAGAATTGATATCCTTGGACTTGTCATTTAATAAAGGTTTAACAGGTCCTCTCTCTCCACAACTAGGAGACCTGAGCAAGCTAAATATTTTGATTTTGGCTGGTTGCAGCTTCAGTGGTAACATTCCAGATGCATTAGGAAATCTTTCAGAGCTATCTTTCTTGGCTTTAAATTCAAACAACTTCACTGGAAAAATACCTCCTTCATTGGGTAAACTCTCCAAACTTTATTGGTTGGACTTGGCAGACAATCAACTATCAGGGCCTATCCCAGTTTCAACCTCCACCACCCCTGGATTAGACCTTCTTTTAAAGGCTAAGCACTTCCATTTCAATAAGAACCAGCTTTCAGGTTCCATTCCCCCCAAGCTTTTTAGCTCTGAGATGATACTCATACACATATTGTTTGATGGAAATAATTTAAGTGGGAGTATACCTTCAACAATAGTATTAGTTCAGACCGTCGAGGTTCTCCGGCTTGATAGGAATTTCCTAACAGGAGAGGTTCCATCAAATCTCAACAACCTTACAAACATCAATGAATTGAATTTAGCACATAATAATTTCATAGGTCCTTTGCCCGACTTAACTGGAATGGATACCCTCAACTATGTGGATCTTAGTAACAACTCTTTTGATCCATCTGAAGCTCCAACTTGGTTCACAACTCTTCCATCACTCACCACTCTTGTTATGGAGTTTGGATCTCTTCAAGGTCCTCTTCCATCGAAACTCTTCGACATTCCTCAAATACAGCAAGTGAAACTACGAAACAATGCATTGAACAATACATTGAACATGGGTGACAACATTTGTCCCCAACTGCAGCTTGTAGATCTGCAAGACAATGAGATTTCCTCTGTCACACTCAGTACACAATACAAAAATACATTGATTCTTATAGGAAATCCAGTGTGTACTGCTCTCTCAAATACAAATTACTGCCAACTTCAGCAACAGGCTAAGCAACCATATTCCACCAGTTTAGCTAATTGTGGAGGCAAATCTTGTCCTCCTGATCAAAAGCTCAGCCCCCAAAGTTGTGAATGTGCCTATCCATATCAAGGAACGCTGTACTTTAGAGGACCCTTATTCAGAGAACTATCTAATGTAAATACTTTCCATTCACTTGAAATGAGCCTATGGGTGAAATTGGGTCTAACTCCTGGCTCAGTTTCTTTACAAAACCCCTTCTTCAATAGGCAATATTTTAACAGATCAGATGTTCAAAGAATTGGGTTTGAATTGAGTAATCAAACTTACAAGCCTCCAAAGGAGTTTGGACCGTATTACTTTATTGCATTTCCTTATCCTTTTCCAGGTTCCCACAAAGGAGCTTCTCTCAGCAAAGGATTCATAGTTGGGATAGCAATTGGATGCACATTTCTGGTTCTGATCCTCATAGTATTAGCTATATACGCAATTCTACAAAAGAAGCGCGCAGAGAGAGCCATTGGATTAAGCAGACCATTTGCATCATGGGGACCAAGTGGCAAGGATAGTGGAGGTGCACCACAGTTAAAGGGAGCAAGATGGTTCTCTTATGATGATCTCAAAAAATGCACCAACAATTTCTCTGATAGCAATGAGATAGGCTTTGGTGGCTATGGCAAGGTGTACAAAGGGGTTCTCCCAGATGGGAAAATTGTTGCAATCAAACGAGCGCAGCAAGGATCAATGCAAGGAGGCCTTGAGTTCAAGACTGAAATTGAGTTGCTTTCAAGAGTTCACCACAAGAATCTTGTTGGCCTTGTGGGATTCTGCTTTGAGCAAGGGGAACAGATGTTGGTCTACGAATTTATGCCAAATGGAACACTTAGGGAGAGTTTGTCAGGTAAATCTGACATTCATCTTGATTGGAAGAGGAGACTCCGCATTGCTCTTGGTTCAACCAGAGGACTTGCATACTTACATGAACTCGCCAACCCTCCCATAATCCACAGAGATGTTAAGTCCACAAATATCTTGCTGGATGAAAATTTGACAGCAAAGGTTGCAGATTTTGGCTTGTCTAAGCTTGTATCTGACAGTGAGAAAGGCCATGTTTCAACCCAGGTTAAAGGGACATTGGGTTATCTGGATCCTGAGTACTATATGACCCAACAACTCACTGAGAAGAGTGATGTATACAGTTTTGGGGTAGTGATGCTGGAGCTAATAACTTCGAGACAACCAATTGAGAAGGGCAAGTACATTGTCCGCGAGGTGCGCACGTTGATGAACAAGAATGATGAAGAACACTATGGTCTGAGGGAACTCATGGATCCAGTGGTAAGAAGCACACCAAACCTCATAGGATTTGGGAGGTTCCTGGAGTTGGCAATGCAATGTGTTGAGGAATCAGCTTCAGACCGTCCTACAATGAGTGAAGTTGTGAAAGCACTTGAAACCATTTTGCAGAATGATGGGATGAACACAAACTCTACCTCTGCATCCTCTTCTGCCACAGACTTTGGAGCTTCTAAGGGTGGAATGAGGCACCCCTACATTGATGCTACTTTTACTAGGAAGGATAATGTTAATGATAGTAGTAGTAACGCCTTTGACTACAGCGGGGGGTACACACTTTCAACAAAAGTCGAACCCAAATAG 2856 0.4205 MTVLRVLLFLGLLWAQIHLISSFTDPKDVVTLRSLKDVWQNTPPSWDKSDDPCGAPWEGVTCNKSRVTALGLSTMGLKGKLSGDIGGLTELISLDLSFNKGLTGPLSPQLGDLSKLNILILAGCSFSGNIPDALGNLSELSFLALNSNNFTGKIPPSLGKLSKLYWLDLADNQLSGPIPVSTSTTPGLDLLLKAKHFHFNKNQLSGSIPPKLFSSEMILIHILFDGNNLSGSIPSTIVLVQTVEVLRLDRNFLTGEVPSNLNNLTNINELNLAHNNFIGPLPDLTGMDTLNYVDLSNNSFDPSEAPTWFTTLPSLTTLVMEFGSLQGPLPSKLFDIPQIQQVKLRNNALNNTLNMGDNICPQLQLVDLQDNEISSVTLSTQYKNTLILIGNPVCTALSNTNYCQLQQQAKQPYSTSLANCGGKSCPPDQKLSPQSCECAYPYQGTLYFRGPLFRELSNVNTFHSLEMSLWVKLGLTPGSVSLQNPFFNRQYFNRSDVQRIGFELSNQTYKPPKEFGPYYFIAFPYPFPGSHKGASLSKGFIVGIAIGCTFLVLILIVLAIYAILQKKRAERAIGLSRPFASWGPSGKDSGGAPQLKGARWFSYDDLKKCTNNFSDSNEIGFGGYGKVYKGVLPDGKIVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLVGLVGFCFEQGEQMLVYEFMPNGTLRESLSGKSDIHLDWKRRLRIALGSTRGLAYLHELANPPIIHRDVKSTNILLDENLTAKVADFGLSKLVSDSEKGHVSTQVKGTLGYLDPEYYMTQQLTEKSDVYSFGVVMLELITSRQPIEKGKYIVREVRTLMNKNDEEHYGLRELMDPVVRSTPNLIGFGRFLELAMQCVEESASDRPTMSEVVKALETILQNDGMNTNSTSASSSATDFGASKGGMRHPYIDATFTRKDNVNDSSSNAFDYSGGYTLSTKVEPK 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00870 951 Pfam Protein tyrosine and serine/threonine kinase 617 883 IPR001245 GO:0004672|GO:0006468
Cca11g00870 951 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 919 - -
Cca11g00870 951 SMART serkin_6 613 886 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00870 951 MobiDBLite consensus disorder prediction 891 912 - -
Cca11g00870 951 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Cca11g00870 951 MobiDBLite consensus disorder prediction 891 907 - -
Cca11g00870 951 PANTHER LRR RECEPTOR-LIKE KINASE 1 919 - -
Cca11g00870 951 Gene3D Ribonuclease Inhibitor 284 431 IPR032675 -
Cca11g00870 951 ProSiteProfiles Protein kinase domain profile. 613 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00870 951 Gene3D Phosphorylase Kinase; domain 1 587 688 - -
Cca11g00870 951 Gene3D Ribonuclease Inhibitor 184 283 IPR032675 -
Cca11g00870 951 SUPERFAMILY Protein kinase-like (PK-like) 599 895 IPR011009 -
Cca11g00870 951 SUPERFAMILY L domain-like 39 405 - -
Cca11g00870 951 CDD STKc_IRAK 619 886 - -
Cca11g00870 951 ProSitePatterns Protein kinases ATP-binding region signature. 619 641 IPR017441 GO:0005524
Cca11g00870 951 Gene3D Transferase(Phosphotransferase) domain 1 689 908 - -
Cca11g00870 951 MobiDBLite consensus disorder prediction 927 951 - -
Cca11g00870 951 MobiDBLite consensus disorder prediction 927 941 - -
Cca11g00870 951 ProSitePatterns Serine/Threonine protein kinases active-site signature. 733 745 IPR008271 GO:0004672|GO:0006468
Cca11g00870 951 Gene3D Ribonuclease Inhibitor 27 183 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00870 Cca-Chr11 17477457 17484103 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00870 6 951 Receptor kinase-like Gene Family AT1G79620 70.606 0.0 1412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Cca11g00870 PK_Tyr_Ser-Thr 2.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00870 - - gmx:100792249 1735.7