Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00869 ATGGATGGGGTCGCACGCGCGGAGGAGCAGCCTCAGTGCAGAGACTTGGCCTCGGGATGGCGTCCCCGCGGCTCTGCGTTCGCTCCCTGTGTGCCGAAGGCTCCCCAAGAAGAAGCTGCTTCCGAGAAGCCGCAACCGCTGCGCGTGGTTGTGAGGAAACCCTTGGTGGCTAGATTGACCAAAGAAATTGTTGAAACATACCAAATATGCAATCCACAGTTTAAATATTCTGAAGATCTAAATCCAAAAAGATTTTTGACCAGCCCATCTGTTGGAGTGCTTAATGATGGCTATGATAATGTAAACTCAGATCTTATTTTGACGGTGAATTTTGTCTTGAATCATTTAGAGAAAAATAAAAGATATATTGTCAAAGATCTCCTTGGCCATGGGACATTTGGACAAGTGGCTAAATGCTGGGATTCAGATACCAACAGTTTTGTTGCTGTGAAGATCATTAAAAATCAACCTGCTTACTATCAACAGGCGTTGGTTGAAGTAACTATTTTAACAACGTTAAATAAGAAGTATGATCCTGAGGATAAGCATCACATTGTTCGTATATATGATTATTTTGTATATCAACGACATTTGTGCATTTGCTTTGAGTTGCTGGACACAAACTTGTATGAGCTTATCAAGATGAATCATTTTAGGGGATTATCACTTGGTATTGTTCAGCTATTTTCTAAGCAGATTTTATGCGGACTGGCTCTACTAAAAGAGGCTGCCATTATTCATTGTGATCTGAAGCCAGAAAACATTCTTTTATGTACGAGCCCTGTGAAGCCAGCAGAAATAAAAATTATTGATTTTGGATCAGCATGCATGGAAAACCGCACCGTTTACTCTTATATTCAGAGTCGATACTATAGATCACCTGAGGTTCTTCTTGGATATCAATACACAACAGCTATTGATATGTGGTCCTTCGGGTGCATAGTGGCGGAATTGTTTCTTGGATTACCATTATTTCCTGGGGCTTCAGAATTTGATCTTCTGAAACGGATGATTGAAATACTTGGAGGACAACCACCTGATTATGTACTAAGGGATGCCAAAAACACAAGTAAATTCTTTAAGTGTATTGGGAGTCTCCAGCACATCGAGAGCAGTGAGAGTTCCAAAAATGGAAGAAGTGTTTATCAAGCATTGACAGTGGAAGAATATGAAACTAGAGAATTGAAGAAGCCATCAATTGGAAAAGAGTATTTTAATCATATGAACCTTGAAGCAATAGTTACAAACTATCCCTACAGAAAAAACCTAGCTAAAGAAGATATTGTCAAAGAAAGTCAAATACGACTGGCTCTTATTGATTTTTTGAAAGGGCTTGTTGAGTTTGATCCCGCAAAACGCTGGTCACCCTTTCAGGCTTCAAAACACCCTTTTGTAACTGGGGAGCCTTTTATACACCCTTACAAGCCTCCTCCAGAGACTCCTCACATGCCAGTAGTTCAAAATATCAAGGTGGATAATCATCCAGGTGGAGGACACTGGTTTGCTGCTGGTCTATCACCTAACGTTCCAGGGAAAAACAGAGCTTCCCTCTATAGCAGTCCACATTTTCAAATGGTTCAACATCCACCTGCTAATAGTTATGGCAGTGTAGGAAGCCATGGGAGCTATAATGATAGCGTTGGGCTTGGAAGCAGCTATGGAAGTTATGGAGAGAGCAGTAACATGTTTGCTTACTATTCACCTATTGGTCCATCTGGTATGAACATGCACAATCAGGGTAGTATGTCAATGCTTGGGAATAGTCCAGATGCTAGGAGGAGAGTCAAGTACCAACCTGGGAATGGGCTGGGCATAAGTCCATCAGCTGGAAATTTCGCTCCCCTGCCCCTTGGTGCCAGCCCATCTCAATTTACTCCACCAAGTTCCTATAGTCAGGTTTCAGTTGGTTCTCCGGGACACTACGGACCAACATCTCCTGCAAGAGGAACTTCTCACGGATCACCTTTAGGAAAGTCAGCTGCAGTTAGCCAGTTTAATAGAAGAAAAAATTGGGGACATTCTGGAAGTCCTCAAACTCAAGAAACATTTTCTTCACATTGGCAAGGTCAATATTCTGACAGCTCAAGCCATACTGAGGGAACATCACAAGCTCTTGGCAGTTCACCATCATATCTACAGTCAAATAGTAATCCTGTAAACTGGAAGCAGCGAGGAAGTGGAGGGCTACCTGCTAATCAAAATATTTCTTGCTTGATTAAGCCCAGTGTTAATATGAACTCGCAATCAACAGAATCAGTTCATGACAATGCAGAGGTGGGCATTTCGTTGCCTGATCCTGGAGATTGGGACCCTAATTATAGTGATGAATTACTTCTTCAAGACGATGGTTCAGATGAAAGCTGTTTGACAACTGAGTTTGGCAGAAGTATGAATCTTGGTTCTACTGAAACTTGGGCTGGATTTGGAAGGTTCAACCATGTTTCCAGCTCCAACACTCCAATAATCATGCAGAGACGAAATGGACCAAGTCAAGCATTTACTAATGTTGAGATGGGAAACCTTCCGACACATGATCTTCAGGCAGCATATGTACCCTCTATGTCTAAACATTTTCATCTCATGCCTCATATTTTACAAAATTCCCCAAGCCGTTTTGGGCACCAATCTGTTCAAAGATTCACCCATGGAAGACCCCCCCAGGGGGCTGACTGGAATCAAATTAAGATTCAGACTCCTTCTGGCATCAGCAGTGGCCCTCGTTCTCCCAGGAATACCTCATTCTCCAACACTATGACATGGGGGCGAAGAATGAATCCTCCTGTATCAAGCATGCCTCCAACATCCCGCACAAGAAAAGATTATGCAAGGATAGACTAG 2838 0.4249 MDGVARAEEQPQCRDLASGWRPRGSAFAPCVPKAPQEEAASEKPQPLRVVVRKPLVARLTKEIVETYQICNPQFKYSEDLNPKRFLTSPSVGVLNDGYDNVNSDLILTVNFVLNHLEKNKRYIVKDLLGHGTFGQVAKCWDSDTNSFVAVKIIKNQPAYYQQALVEVTILTTLNKKYDPEDKHHIVRIYDYFVYQRHLCICFELLDTNLYELIKMNHFRGLSLGIVQLFSKQILCGLALLKEAAIIHCDLKPENILLCTSPVKPAEIKIIDFGSACMENRTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDLLKRMIEILGGQPPDYVLRDAKNTSKFFKCIGSLQHIESSESSKNGRSVYQALTVEEYETRELKKPSIGKEYFNHMNLEAIVTNYPYRKNLAKEDIVKESQIRLALIDFLKGLVEFDPAKRWSPFQASKHPFVTGEPFIHPYKPPPETPHMPVVQNIKVDNHPGGGHWFAAGLSPNVPGKNRASLYSSPHFQMVQHPPANSYGSVGSHGSYNDSVGLGSSYGSYGESSNMFAYYSPIGPSGMNMHNQGSMSMLGNSPDARRRVKYQPGNGLGISPSAGNFAPLPLGASPSQFTPPSSYSQVSVGSPGHYGPTSPARGTSHGSPLGKSAAVSQFNRRKNWGHSGSPQTQETFSSHWQGQYSDSSSHTEGTSQALGSSPSYLQSNSNPVNWKQRGSGGLPANQNISCLIKPSVNMNSQSTESVHDNAEVGISLPDPGDWDPNYSDELLLQDDGSDESCLTTEFGRSMNLGSTETWAGFGRFNHVSSSNTPIIMQRRNGPSQAFTNVEMGNLPTHDLQAAYVPSMSKHFHLMPHILQNSPSRFGHQSVQRFTHGRPPQGADWNQIKIQTPSGISSGPRSPRNTSFSNTMTWGRRMNPPVSSMPPTSRTRKDYARID 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00869 945 MobiDBLite consensus disorder prediction 897 936 - -
Cca11g00869 945 Gene3D Phosphorylase Kinase; domain 1 87 202 - -
Cca11g00869 945 SUPERFAMILY Protein kinase-like (PK-like) 117 488 IPR011009 -
Cca11g00869 945 PANTHER BNAC04G29850D PROTEIN 40 865 - -
Cca11g00869 945 Pfam Protein kinase domain 123 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00869 945 ProSitePatterns Protein kinases ATP-binding region signature. 128 151 IPR017441 GO:0005524
Cca11g00869 945 ProSiteProfiles Protein kinase domain profile. 122 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00869 945 PANTHER DUAL SPECIFICITY PROTEIN KINASE 40 865 - -
Cca11g00869 945 Gene3D Transferase(Phosphotransferase) domain 1 203 466 - -
Cca11g00869 945 MobiDBLite consensus disorder prediction 897 945 - -
Cca11g00869 945 MobiDBLite consensus disorder prediction 577 727 - -
Cca11g00869 945 MobiDBLite consensus disorder prediction 647 727 - -
Cca11g00869 945 MobiDBLite consensus disorder prediction 622 639 - -
Cca11g00869 945 MobiDBLite consensus disorder prediction 746 771 - -
Cca11g00869 945 SMART serkin_6 122 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00869 945 CDD PKc_YAK1 122 465 - -
Cca11g00869 945 ProSitePatterns Serine/Threonine protein kinases active-site signature. 245 257 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00869 Cca-Chr11 17379346 17411125 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00869 109 351 MAP Kinase Gene Family AT1G18150 34.109 4.65e-31 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-YAK Cca11g00869 Pkinase 4e-50 CL0016