Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00864 ATGAATAATATTGGGAATAAATTGGCCAAGGGTCATGAATTATGGATCCTAATTAAACTGCAACTTGTGGCTGGTGCTGCTAGCTCTGCTTTGAAGAATGAAAAATACAATAAAAAGCTGCTCTCACTCTTTCACTCACTTTTTGTTAAGTCTTCATTTGCCAATGCAAGGATGAGCTCGTTTTCAATCACGCGGAAGAAGACGCCGTTCCagaagcacagagaagaggaagaggcaaagaagaagAGAGCAGAAGATGAGACTGCTCGATTATATGCCGAGTTTGTAGAGTCATTTCAAGGAGATACTACACCCGGGTCAAAGACTTTTGTTCGAGGAGGAACAATTAATCCCAATGATAGATTTAAAGATGATTCTGAGGGTTATTTATCATTTATTTTTCTTTGCAGGTATGTACCATCTTTTATTCCACCTCCAATGGCAACCAAGGGGAAAGAATCTGAAAGGAAAaaagaggaggaaaagccaaaggagaaagagaaagggaaGTCAAGAAACATTGATCATTTTATGGAGGAGCTAAAGCATGAGCAAGAGATGAGGGAGAAGCGAAATCAAGAACGCGAACATTGGCGTGATGGGCGTCATGCAGACCATTCCACTTCCAGTCGCTTTGATGAGCTGCCTGATGACTTTGACCCAAGTGGGAAACTTCCAGGATCATTTGATGATGGTGATCCCCAAACTACAAATCTTTATGTCGGAAATCTCTCACCCAAGGTTGATGAAAATTTCCTTCTCCGTACTTTTGGGAGATTTGGACCTATTGCTAGTGTGAAGATTATGTGGCCAAGGACAGAGGAAGAGCGAAGGCGGCAAAGAAATTGTGGCTTTGTAGCTTTCATGAACAGAGCTGATGGACAGGCAGCAAAAGATGAAATGCAAGGAGTTGTGGTTTATGAGTATGAATTGAAAATTGGATGGGGAAAGTCTGTTGCCCTCCCATCGCAAGCACTACCTGCACCTCCACCAGGGCATATGGCTATCAGGAGTAAGGAGGGTAGTACTGTGATCTTGTCTGGTCCGTCAGGTCCACCAGTAACATCTGTGCCTAATCAGAATTCTGAACTGGTTCTAACTCCTAATGTTCCTGATATAATGGTTACACCTCCCGAGGATGAACATCTAAGGCATGTAATTGATACAATGGCTTTGTATGTCCTGGATGGTGGATGTGCTTTCGAACAAGCTATTATGGAGAGGGGTCGTGGCAATCCACTTTTCAACTTCTTGTTTGTTCTTGGCTCAAAGGAACATACCTACTACGTTTGGAGACTCTACTCATTTGCCCAGGGTGATACTCTTCAAAGATGGAGGACTGAACCTTTCATCATGATAACGGGTAGTGGAAGATGGATTCCTCCCCAATTACCAACATCAAAAAGTCCAGAACATGAAAAGGAGGCTGGTTCGACACATGCTGGAGGAAGAAGCAGGCGTGTAGAGCCTGAAAGAACACTGACTGATGCACAGAGGGATGAGTTTGAAGATATGCTGCGTGCTTTAACATTAGAGAGAAGCCAGATAAAAGAGGCTATGGGGTTTTCTTTAGATAATGCTGATGCAGCTGGGGAGATAGTTGAAGTTTTGACTGAATCCTTGACGCTTAAAGAAACCCCTATTCCGACTAAAATTGCAAGACTTATGCTTGTCTCTGATATTCTTCATAATAGTAGTGCTCCTGTAAGAAATGCATCAGCATATCGCACAAAGTTTGAAGCAACATTACCAGACATAATGGAGAGTTTTAATGACCTGTATCGTAGCATTATGGGGCGTATTACTGCTGAAGCCCTAAAGGAGAGAGTGATGAAAGTTTTACAAGTGTGGGCCGACTGGTTTCTCTTTTCAGATGCTTATGTGAATGGCTTAAGAGCCACTTTCCTTCGACCTGGGAACTCTGGTGTAACTCCATTCCATTCCATATGTGGTGATGCACCTGAGATTGAGCAGAAGACCACTTCTGATGATACAGTTATTGGTGGCAAGACCAACCAAGATGCTGCATTGGCAATGGGTCGAGGGGCTGCAATGAAGGAGCTAATGAATCTTCCTCTTGCTGAGCTGGAAAGACGGTGCCGACACAATGGATTGTCACTTGTTGGTGGTAGAGAAATGATGGTTGCCCGGTTGCTAAGCCTTGAAGAGGCAGAAAAGCAAAGAGGTTATGAGCTAGATGACGAATTGAAATATGCCCACAACCAAGGGAGTTCTGGGAAATATTCAAGTAATCGGCGAGAAACAAGTGCAGAACCTGAACCAGTAGGACTATCTGCATGGAGCCATTATGGGGATGAAGATTTGCAGTCTCAGGGAAGAAGTTCTGTATCTTTAGCCTCAACCCTTCCTATTCCACAGCCTGAACTTAAAGCCTTCACAAAAAAGGAGAAGAATGATCCAGTTTTGCCAGCCTCTAAATGGGCTCGAGAGGATGATGAGAGTGATGATGAACAAAAGAGAAGTGGAAAAAATCTCGGCTTAAGCTACTCATCTTCTGGTAGTGAGAATGCGGGTGAAGGTCTTATTAAAGCTGATGAATCAGAATCTGCAGCTGATACAAGTTTTCCTGCTCATGCTGACAGTGGAATGAATGAAGAGCAGAGGCAAAAGCTGAGACGCTTGGAGGTTGCTTTAATTGAATACCGTGAGTCTCTTGAAGAAAGGGGGATTAAAAATTTGGAGGAAATTGAGAAGAAAGTTCAGTCACATAGGAAACGGCTGCAAGCGGAGTATGGGTTATCAGATTCCGGTGAAGATGGTCAAGGCAATAGAAGAACTTCAGAAAGGAGGGATAGGCATGATGTTTCAAGGAAACGACACCGTAGCCGAAGTCCAAGTGGGACCGGCATCGGGAAAAGAGTGGAAGCAGAGAGAGGGATGATCATgataaggatagaggcagggatagggatagggatagggacagagacaggAGAAGAAGAACCAAATAAGAACCTTTCAGGTGTTTCAACACAGATCTGTTACCTTGATGATTTGCAGATTGGCTTGCAAGAGTCTGGAGGACAGTTGGCTTTTTGTCTTCATAGGGGGATATTGGCAATGTGA 3087 0.4192 MNNIGNKLAKGHELWILIKLQLVAGAASSALKNEKYNKKLLSLFHSLFVKSSFANARMSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDTTPGSKTFVRGGTINPNDRFKDDSEGYLSFIFLCRYVPSFIPPPMATKGKESERKKEEEKPKEKEKGKSRNIDHFMEELKHEQEMREKRNQEREHWRDGRHADHSTSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGSTVILSGPSGPPVTSVPNQNSELVLTPNVPDIMVTPPEDEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPQLPTSKSPEHEKEAGSTHAGGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKEAMGFSLDNADAAGEIVEVLTESLTLKETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSIMGRITAEALKERVMKVLQVWADWFLFSDAYVNGLRATFLRPGNSGVTPFHSICGDAPEIEQKTTSDDTVIGGKTNQDAALAMGRGAAMKELMNLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKYAHNQGSSGKYSSNRRETSAEPEPVGLSAWSHYGDEDLQSQGRSSVSLASTLPIPQPELKAFTKKEKNDPVLPASKWAREDDESDDEQKRSGKNLGLSYSSSGSENAGEGLIKADESESAADTSFPAHADSGMNEEQRQKLRRLEVALIEYRESLEERGIKNLEEIEKKVQSHRKRLQAEYGLSDSGEDGQGNRRTSERRDRHDVSRKRHRSRSPSGTGIGKRVEAERGMIMIRIEAGIGIGIGTETGEEEPNKNLSGVSTQICYLDDLQIGLQESGGQLAFCLHRGILAM 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00864 1028 Pfam cwf21 domain 871 917 IPR013170 -
Cca11g00864 1028 PANTHER RNA PROCESSING PROTEIN LD23810P 55 954 - -
Cca11g00864 1028 MobiDBLite consensus disorder prediction 734 784 - -
Cca11g00864 1028 MobiDBLite consensus disorder prediction 797 829 - -
Cca11g00864 1028 Pfam Surp module 384 436 IPR000061 GO:0003723|GO:0006396
Cca11g00864 1028 MobiDBLite consensus disorder prediction 468 493 - -
Cca11g00864 1028 SMART 558neu5 501 636 IPR006569 -
Cca11g00864 1028 Gene3D - 494 640 IPR008942 -
Cca11g00864 1028 MobiDBLite consensus disorder prediction 145 234 - -
Cca11g00864 1028 SMART cwf21_2 870 919 IPR013170 -
Cca11g00864 1028 MobiDBLite consensus disorder prediction 150 220 - -
Cca11g00864 1028 Pfam CID domain 501 629 IPR006569 -
Cca11g00864 1028 Gene3D - 870 921 - -
Cca11g00864 1028 MobiDBLite consensus disorder prediction 830 844 - -
Cca11g00864 1028 SMART rrm1_1 238 314 IPR000504 GO:0003723
Cca11g00864 1028 MobiDBLite consensus disorder prediction 742 756 - -
Cca11g00864 1028 SUPERFAMILY ENTH/VHS domain 498 635 IPR008942 -
Cca11g00864 1028 ProSiteProfiles SURP motif repeat profile. 386 429 IPR000061 GO:0003723|GO:0006396
Cca11g00864 1028 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 239 311 IPR000504 GO:0003723
Cca11g00864 1028 Gene3D - 147 320 IPR012677 -
Cca11g00864 1028 Gene3D Surp module 372 441 IPR035967 GO:0003723|GO:0006396
Cca11g00864 1028 SUPERFAMILY Surp module (SWAP domain) 360 441 IPR035967 GO:0003723|GO:0006396
Cca11g00864 1028 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 237 318 IPR000504 GO:0003723
Cca11g00864 1028 SMART surpneu2 384 438 IPR000061 GO:0003723|GO:0006396
Cca11g00864 1028 Coils Coil 871 891 - -
Cca11g00864 1028 ProSiteProfiles SAP motif profile. 688 722 IPR003034 -
Cca11g00864 1028 MobiDBLite consensus disorder prediction 796 875 - -
Cca11g00864 1028 MobiDBLite consensus disorder prediction 914 962 - -
Cca11g00864 1028 PANTHER - 55 954 - -
Cca11g00864 1028 Coils Coil 74 94 - -
Cca11g00864 1028 CDD RRM_SR140 236 319 IPR035009 -
Cca11g00864 1028 Coils Coil 897 917 - -
Cca11g00864 1028 ProSiteProfiles CID domain profile. 494 639 IPR006569 -
Cca11g00864 1028 SUPERFAMILY RNA-binding domain, RBD 230 325 IPR035979 GO:0003676
Cca11g00864 1028 Coils Coil 499 519 - -
Cca11g00864 1028 MobiDBLite consensus disorder prediction 461 493 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00864 234 314 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 3.52e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00864 K12842 - gmx:100776093 1645.17