Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00860 ATGCCCACTGTCGCTCCCAACGATGATTTTGCAAGCGATGGAATTGATGCTTTGACGAAAGGCCTCGATAAAGGGTTTGTGCTCGACTATAATGTTTCTCGAGACTGCACCAGATGCCTGGGAAGCGAAGGAAATTGCTCAAGCAATGGTGGTGGTGTTGATGTTGATGTTGAACAGCGTGTACTTTCGTGCTATTATTGTCCAGATGGATCTCATGATCACTTATTCTGTTCTACTACCAACAGAAGCAGAGAACTAATCGATGGTTGTCCTGTGGCTGTAAAGATATTGAATGCATCCAAAGGAAATGGTGAAGACTTTATCAATGAGGTTGCTAGTATTAGTAGAACTTCTCATGTTAATGTTGTCACACTTCTTGGATTTTGTTTGGAAGGACGCAAGAAAGCTCTCATCTATGAATTTATGTCTAATGGTTCCCTTGACAAGTTTATTTACGATAAGGGACTTGAAACCATTCGACCATTAAGCTGGGATAATTTGTGGAAAATAGCCATTGGAATAGGTCGAGGACTAGAGTATCTACATAGAGGATGCAACACTCGAATTTTACATTTTGACATTAAACCACATAACATTCTTTTGGATGAGAATTTTTGCCCCAAGATTTCAGATTTTGGCCTTGCAAAACTTTGTCCTAGAAAAGAAAGTATTATTTCTATGTCAAATGCCAGAGGAACAATAGGCTATGTAGCTCCAGAAAAATGGTGGGAGGAAGGAAGAATATTAATGCAGAAGCCAGCCACACAAGTGAGATATATTTTCCACATTTGGGTATACAACAAGTTAGAGCAGGGTGGAGATTTAAGACCTAATGGTGTGCTAGCCACAGAAGAAAATGAGATAGCAAGGAGGATGATTGTAGTTGGTTTATGGTGTGTTCAAACGTTCCCAAAGGATAGACCTACTATGAGTAGAGTAATTGATATGCTAGAAGACAACATGAATTCCCTAGAAATTCCACCTAAACCTGTTCTTTCTTCTCCCACTAGATCAACGCCAGAATCTACCACTAGTTAA 1038 0.3969 MPTVAPNDDFASDGIDALTKGLDKGFVLDYNVSRDCTRCLGSEGNCSSNGGGVDVDVEQRVLSCYYCPDGSHDHLFCSTTNRSRELIDGCPVAVKILNASKGNGEDFINEVASISRTSHVNVVTLLGFCLEGRKKALIYEFMSNGSLDKFIYDKGLETIRPLSWDNLWKIAIGIGRGLEYLHRGCNTRILHFDIKPHNILLDENFCPKISDFGLAKLCPRKESIISMSNARGTIGYVAPEKWWEEGRILMQKPATQVRYIFHIWVYNKLEQGGDLRPNGVLATEENEIARRMIVVGLWCVQTFPKDRPTMSRVIDMLEDNMNSLEIPPKPVLSSPTRSTPESTTS 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00860 345 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 259 345 - -
Cca11g00860 345 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 85 242 - -
Cca11g00860 345 Pfam Protein kinase domain 85 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00860 345 SUPERFAMILY Protein kinase-like (PK-like) 86 318 IPR011009 -
Cca11g00860 345 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Cca11g00860 345 SMART serkin_6 78 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00860 345 PANTHER RUST RESISTANCE KINASE LR10-RELATED 259 345 IPR045874 GO:0004672
Cca11g00860 345 PANTHER RUST RESISTANCE KINASE LR10-RELATED 85 242 IPR045874 GO:0004672
Cca11g00860 345 ProSiteProfiles Protein kinase domain profile. 61 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00860 345 Gene3D Phosphorylase Kinase; domain 1 82 142 - -
Cca11g00860 345 MobiDBLite consensus disorder prediction 325 345 - -
Cca11g00860 345 Gene3D Transferase(Phosphotransferase) domain 1 143 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00860 Cca-Chr11 17161795 17165068 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00860 86 344 Receptor kinase-like Gene Family AT1G66910 51.399 9.25e-95 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Cca11g00860 Pkinase 6.5e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00860 - - gmx:102665158 402.134