Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00858 ATGGCGACGTTGCTGAGAAAACTGTGCGAATCGGCGTCGCTGAAGCGATCCGGGTCCAATTCGAACCAGAACCCATCCTCGGAACGCGCGCCTACCTCTTTGGGCGCCTTCGACCCTCTCCCTCCCGACATACTCATCAAAATCGTGCGACTCTTGGGCCCCAAACACGCCGCTAAACTCAGCCTCGTTTCCAAGTCATGGCAGTCCCTCGTCTCCGACAACGCCCTCTGGGCCCACTTCCTGCAAGCCCACCACCCCCACTCCGCCCTCTTCGCCGAATCCGCTTTGAGCTCTGGCTACCCTCTTCCTGAGGCTGACCAGAACGTGCCACGTGTCCCGTTCCAGCATGTTTATGCCCTACGTGAACGCCTCCCTCCTTCCGTTGTCATCGACGGGGGTTCTGGCTATTGCAAATTCGGTTGGACCAAAGAAGCGTCTCCCTCGGGTCGATTCGCAACTTTTTTGGAATTCGGTAACGTTGAAACGCCTATGTATTCTAGACTTCGGCATTTTTTCGCGACTATCTATAACAGGATGCAGGTGAAACCAAGTTCTCAACCAGTTGTTGTTTCTATACCAATATGCCACTATGATGATACTGAATCAGCCAAAGCATCAAGACAACAACTTAAAGAAGCAATCTATGCATCCCTTTTTGACATGAATGTACCTGCTGTTTGTGCTCTCAATCAGGGGACTTTAGCTCTGTATGCTGCAAAACAAACTTCCGGGATAGCTGTTAATATAGGTTTTCAAGTAACATCTATAGTTCCAATTTTAAATGGTAAAGTGATGCGAAAGGTGGGTGTGGAGGTTGTGGGTCTGGGAGCACTAAAACTTACCGGATTTCTTAGAGAACAGATGCAACAAAACAACATAAGTTTTGAATCTTTGTACACTGTTCGCACCCTGAAAGAGAAGCTATGTTATGTTGCTGTTGACTATGAAGCTGAACTACTGAAAGATACACGAGCATCTTTTGAAGCTGTAGAAGGGTTGTTTACACTCTCAAAGGAACGGTTTCTAACTGGAGAGATGTTATTCCAGCCAAGTCTTGCTGGGGTGCGAGCAATGGGTTTGCATCAGGCCATCGCACTTTGTATGGATCATTGCTATACTGCAGAATTAGCTGGCAACAATAATTGGTTTAAGACTGTTGTCTTATCAGGAGGAACTGCATGTTTACCTGGTTTAGCAGAAAGGTTAGAAAAGGAACTTCATTCGTTGCTTCCTCCTTATATGTCCAATGGAATTAGAGTCATACCTCCTCCATTCGGTGTGGATACTGCATGGTTTGGTGGAAAGATTATTGGCAGTTTGAGCACCTTTCCTGGCCCGTGGTGTACCACAAAAAAGCAATTCCGTCAGAAGTCTAAACTTAATCGCATTTGGTTCAACAACTTCTGGGGACTCAACAGGTTATTGATAGCTGGATGCTTGATTCGGCTTGCTTCCATACGGGTTTAA 1467 0.4683 MATLLRKLCESASLKRSGSNSNQNPSSERAPTSLGAFDPLPPDILIKIVRLLGPKHAAKLSLVSKSWQSLVSDNALWAHFLQAHHPHSALFAESALSSGYPLPEADQNVPRVPFQHVYALRERLPPSVVIDGGSGYCKFGWTKEASPSGRFATFLEFGNVETPMYSRLRHFFATIYNRMQVKPSSQPVVVSIPICHYDDTESAKASRQQLKEAIYASLFDMNVPAVCALNQGTLALYAAKQTSGIAVNIGFQVTSIVPILNGKVMRKVGVEVVGLGALKLTGFLREQMQQNNISFESLYTVRTLKEKLCYVAVDYEAELLKDTRASFEAVEGLFTLSKERFLTGEMLFQPSLAGVRAMGLHQAIALCMDHCYTAELAGNNNWFKTVVLSGGTACLPGLAERLEKELHSLLPPYMSNGIRVIPPPFGVDTAWFGGKIIGSLSTFPGPWCTTKKQFRQKSKLNRIWFNNFWGLNRLLIAGCLIRLASIRV 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00858 488 Gene3D Actin; Chain A, domain 4 275 357 - -
Cca11g00858 488 PANTHER ACTIN-RELATED PROTEIN 8 88 460 - -
Cca11g00858 488 SMART fbox_2 40 80 IPR001810 GO:0005515
Cca11g00858 488 Pfam Actin 174 450 IPR004000 -
Cca11g00858 488 Pfam F-box-like 40 79 IPR001810 GO:0005515
Cca11g00858 488 SUPERFAMILY Actin-like ATPase domain 242 451 IPR043129 -
Cca11g00858 488 MobiDBLite consensus disorder prediction 13 35 - -
Cca11g00858 488 Gene3D - 128 456 - -
Cca11g00858 488 ProSiteProfiles F-box domain profile. 34 80 IPR001810 GO:0005515
Cca11g00858 488 CDD NBD_sugar-kinase_HSP70_actin 128 272 - -
Cca11g00858 488 MobiDBLite consensus disorder prediction 13 31 - -
Cca11g00858 488 Gene3D - 28 124 - -
Cca11g00858 488 PANTHER ACTIN 88 460 IPR004000 -
Cca11g00858 488 SUPERFAMILY F-box domain 28 100 IPR036047 GO:0005515
Cca11g00858 488 SUPERFAMILY Actin-like ATPase domain 126 247 IPR043129 -
Cca11g00858 488 SMART actin_3 125 468 IPR004000 -
Cca11g00858 488 Gene3D - 232 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00858 Cca-Chr11 17087311 17101097 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00858 174 447 Cytoskeleton Gene Families AT3G12110 33.099 2.22e-40 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00858 K16616 - gmx:100804254 830.476