Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00857 ATGGGTAGTAGTGACATGGACAAAACCCCAAAAGAGAAGGAGTCTAAGACACCTCCAGCTACGTCACAGGAGCAGTCTTCAACAACTCCCATGGCAACAATGAATCCTGACTGGTCTAACTTTCAGACATATTCTCCTATACCTCCACATGGGTTCTTGGCATCAAGTCCCCAAGCCCACCCATATATGTGGGGTGTCCAGCATATTATGCCTCCCTATGGCACCCCACCACATCCTTATGTTGCAATGTATCCCCATGGTGGCATATATGCTCATCCATCCATTCCTCCGGGATCTTATCCTTTCAGTCCTTTTGCCATGGCTTCTCCAAATGGTGTTGCAGATGCTACGGGAAATACCCCAGGCGGCATTGAAGTTGGTGGTAAACCTCCTGAGGTGAAGGAAAAATTACCAATCAAAAGATCAAAAGGAAGTGCCAGTGCGGGTAGTTTGAATATGTGGATTACAGGGAAAAATAATGAACTTGGTAAAACACCAGGAGAATCTGCTAATGGGATTCATTCCAAAAGTGGTGAGAGTGCAAGTGAAGCTACTAGCGAAGGAACTGATGAGAATTCCCAGAATGACTCTCAATTGAAATCCGGAGAGAGGCAGGACTCTTTTGAAGATGAACCATCTCAAAATGGAAGTTCAGTACATACTCCTCAAAATGGGGTACATAATAGAGCTAAGACAGTTGTTAACCAAACTATGTCTATCATACCTATATCTACTGCAACTGCTCCTGGGGCAGTTCCAGGTCCCACAACTAATTTAAATATAGGAATGGATTATTGGGGCACCCCGAATTCATCAACCATTCCTGCACTGCACGGAAAGGTTCCTTCTACTGCTGCAGTTGCTGGAGGGATGATTACTACTGGGTCACGAGATGGTGTTCAGCCACAAGTTTGGCTACAGGACGAAAGAGAGCTCAAAAGACAAAGGCGGAAGCAGTCTAATAGGGAGTCTGCACGCAGATCCAGGTTACGCAAACAGGCCGAATGTGATGAACTAGCACAGCGTGCTGAAGGTTTGAAAGATGAAAATGCCACTCTCCGATCAGAAGTGAGTCGGATAAGGAGCGAGTATGAGCAGCTACTTTCTGAGAATGCGTCCCTCAAGGAGAGACTTGGGGAGATACCTGGTGTTGCAACACCTGGGAACGAGGATCTTAGGTCTGGACAGAATGATCAGCATCTTTTGGTTCGAATTGTATTAAAGGTAGGGTGTGAATACTTACTCCGTCATACTTCCTTTGCTACGTCAAATGTTAGTGTTAGCAGTAAAGTTTCGACAACAAGGAAACTTGATAAAGGGAAAGGAAAACAAATGACCTATTCTACTAAACCTGATCCTAAGCTAAAAGTCGAAAAACTTTTGCAGGATGCGATGAAATCTGTCCCCAAGGATGTTGATATAATTCATATCTCCTCTTCTCAAGACTTGGTGGCTACCCAGTTAAATGTTGTCAACCTTTCCTTGGAGGGTGTTACTATGGACCCTGGAGCCGTTCCCCAAAACACGCAAGGGGAAGTTTCTTTATCAGATCCAGCTACTCATGCTGAGACTCTTCATCATTCTTCCTAG 1590 0.4491 MGSSDMDKTPKEKESKTPPATSQEQSSTTPMATMNPDWSNFQTYSPIPPHGFLASSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPHGGIYAHPSIPPGSYPFSPFAMASPNGVADATGNTPGGIEVGGKPPEVKEKLPIKRSKGSASAGSLNMWITGKNNELGKTPGESANGIHSKSGESASEATSEGTDENSQNDSQLKSGERQDSFEDEPSQNGSSVHTPQNGVHNRAKTVVNQTMSIIPISTATAPGAVPGPTTNLNIGMDYWGTPNSSTIPALHGKVPSTAAVAGGMITTGSRDGVQPQVWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEGLKDENATLRSEVSRIRSEYEQLLSENASLKERLGEIPGVATPGNEDLRSGQNDQHLLVRIVLKVGCEYLLRHTSFATSNVSVSSKVSTTRKLDKGKGKQMTYSTKPDPKLKVEKLLQDAMKSVPKDVDIIHISSSQDLVATQLNVVNLSLEGVTMDPGAVPQNTQGEVSLSDPATHAETLHHSS 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00857 529 MobiDBLite consensus disorder prediction 1 40 - -
Cca11g00857 529 SUPERFAMILY Leucine zipper domain 312 368 IPR046347 GO:0003700|GO:0006355
Cca11g00857 529 MobiDBLite consensus disorder prediction 145 201 - -
Cca11g00857 529 Pfam Disordered region downstream of MFMR 135 275 - -
Cca11g00857 529 PANTHER BZIP TRANSCRIPTION FACTOR FAMILY PROTEIN 1 401 - -
Cca11g00857 529 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 316 331 IPR004827 GO:0003700|GO:0006355
Cca11g00857 529 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 401 IPR044827 GO:0003700|GO:0006355|GO:0043565
Cca11g00857 529 Gene3D - 312 366 - -
Cca11g00857 529 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 311 374 IPR004827 GO:0003700|GO:0006355
Cca11g00857 529 MobiDBLite consensus disorder prediction 19 40 - -
Cca11g00857 529 MobiDBLite consensus disorder prediction 309 334 - -
Cca11g00857 529 SMART brlzneu 309 373 IPR004827 GO:0003700|GO:0006355
Cca11g00857 529 MobiDBLite consensus disorder prediction 1 18 - -
Cca11g00857 529 MobiDBLite consensus disorder prediction 503 523 - -
Cca11g00857 529 Pfam G-box binding protein MFMR 1 96 IPR012900 -
Cca11g00857 529 MobiDBLite consensus disorder prediction 502 529 - -
Cca11g00857 529 MobiDBLite consensus disorder prediction 211 227 - -
Cca11g00857 529 Coils Coil 329 377 - -
Cca11g00857 529 CDD bZIP_plant_GBF1 314 364 IPR045314 GO:0003700|GO:0006355
Cca11g00857 529 MobiDBLite consensus disorder prediction 122 227 - -
Cca11g00857 529 Pfam bZIP transcription factor 309 371 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00857 Cca-Chr11 17053008 17069159 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00857 1 382 bZIP Transcription Factor Family AT2G35530 61.282 1.82e-153 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca11g00857 MFMR_assoc 1.1e-55 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00857 K09060 - gmx:100101912 729.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00857 11 17053008 17069159 Cca11g00857 11 17053008 17069159 ECH