Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00853 ATGGAGAAACTGAACCTGTCTGCCAAATATGATCCTGATGCCAAAAGTGATTCATTTCCAATATTCGAACTGCAAGATAGTCAAAATGTTGTAATTGCTCCTTCCAATTCCGCAAGCAGTAGGGAGCCTGTGAACAAATGGATGGCATTTGCTAAAATGCCTGATGGCAACTCAGCAACGAAGGAGAAAAGTGTAACTCAACAAGTGAATGATCTAAAAAACCAGCCATCTCCTGATGATCAAATTTTGACTGAGGCAGCTATAGCTGAGAGAACTGCTGAATGGGGTCTTGTGGTGAACACAGGGAATTTCAAAGCAATTGGGGGAGAGAATAATAACTCAGATAGATTTGGTGAATCAACACGAACTTCTGGGGAGTCAAACTATGGATCTGAGTCATCATCAGGGGTGTTTCCAAGGGTGTCACAAGAGTTGAAGGAAGCATTGGCAACACTGCAACAGACATTTGTTGTATCAGATGCAACCAAACCAGATTGCCCCATCATGTATGCCAGCAGTGGCTTTTTTACCATGACTGGCTATTCTTCAAAGGAGATTATTGGAAGGAATTGTCGATTTCTTCAGGGGCCTGAGACAGATAAGAATGAAGTGGCAAAAATTCGGGATTCAACTGCAAATGGGAGAAGCTATTGTGGAAGACTTTTAAACTACAAGAAAGATGGAACTCCATTTTGGAATCTTCTCACTATCACCCCAATCAAAGATGACCTTGGCAATACTATCAAATTCATTGGAATGCAGGTTGAGGTGAGCAAGTACACAGAAGGTGTGAATGAAAAGGCATTACGGCCAAATGGATTGCCCAAGTCATTAATCCGTTATGATGCTCGTCAAAAGGAGAAAGCTTTGGGTTCCATAACTGAGGTTGTGCAAACTGTTAAGGACCCAAAATCCATTATTAAGGACATGAATGATGATAGTTCTACCAAAATTGAAGAGGCAGAGAAATTGAATTTTGAATTTGTTTTGCCAAAGTCTGCTGATGTTGGGAATACAAGTACAGCTGTTAGACAAACTTCTCCACTCAACATGCAACGCATGAGCTCTAGTCAGGATAAGAACAAGTCATCACGAAAATCAGGACGAATTTCTTTTAAGAGTTTTAAAGGGAAAGATGAAGAGAAGCCTACCATTATTGAACCAGAGGTATTGATGACCAAGGAAATAGAGTGGGCTAACAATTGGGAGCTTTCACAAAGAGAGAGGGACATAAGACAAGGAATTGATCTAGCAACCACATTGGAACGAATAGAAAAGAACTTTGTGATATCTGATCCTAGACTTCCAGATAACCCAATTATATTTGCATCTGATAGCTTTCTTGAACTTACAGAATATACACGAGAAGAAATTTTGGGACGAAATTGTCGGTTTCTTCAAGGACCAGAAACAGATCAAACAACTGTTGCTAGGATAAGGGATGCTATCAGAGAACAGAGAGAAATCACTGTTCAGTTGATCAACTATACTAAGAGTGGAAAGAAGTTCTGGAATTTGTTTCACTTGCAACCTATGCGTGACCAAAAGGGTGAACTTCAATACTTCATTGGAGTTCAACTAGATGGAAGTGATCATGTAGAACCCTTAAAAAACCGCCTGTCTGAGACAACTGAGCAACAAAGTGCTAAGTTGGTGAAAGCCACTGCAGAAAATGTTGATGAAGCTGTCCGAGAACTTCCAGATGCCAACTTGAGACCAGAAGATTTGTGGGCAATTCATTCCCAAACTGTGTTTCCACGACCTCACAAAAAGAACAATACTTCTTGGATAGCAATACAAAAGATTGCTGCTAGAGGTGAAAAAATTGGCCTGCAACATTTTTCGCCTATAAGGCCTTTGGGTTGTGGTGATACTGGCAGTGTTCATTTGGTGGAACTCAAAGGTACGGATGAACTTTATGCAATGAAGGCAATGGAAAAGACTGTAATGTTAAATCGTAATAAGGTCCACAGATCCTGCATTGAGAGAGAGATTATATCATTATTGGATCATCCTTTTCTTCCAACACTATACACCTCATTTCAGACTTCTACACATGTATGTTTGATTACTGACTTCTGCCATGGGGGAGAGTTGTTTGCATTGCTTGACAAGCAACCGATGAAGATTTTCAGAGAAGAATCAGCAAGATTCTATGCAGCAGAGGTTGTCATTGGTTTGGAATATCTCCACTGTTTAGGTATAATTTATCGTGACTTAAAGCCTGAAAATATCTTACTTCAGAAGGATGGTCATGTTGTATTAACTGATTTTGATCTATCATTTATGACAAATTGTAAACCCCAGGTTGTGAAGCAATCACTACCTGGTAAAAGAAGATCACGAAGTCAACCACCACCAACATTTGTTGCAGAGCCAGTTACACAATCAAACTCGTTTGTTGGAACTGAAGAATACATTGCTCCTGAAATTATAACTGGAGCTGGGCATACTAGCGCTATAGATTGGTGGACCCTTGGTATCTTATTGTATGAGATGCTCTATGGCCGTACACCATTTAGAGGAAAGAATAGACAGAAGACATTTTCCAACATCTTACACAAGGATCTTACCTTTCCAAGCAGCATCCCGGCTAGTCTTGCAGCCAGGCAATTGATTAATGCACTATTACAAAGAGACCCTGGCAGTCGTCTAGGTTCAACCACTGGTGCCAATGAAATCAAACAACATCCATTTTTCCGCGGAATCAATTGGCCTCTAATTCGCAACATGACTCCACCCCCATTAGATGTTCCTCTTCGGTTGATAGGAAAAGAACCAGTGGCAAAGGATTTGAAGTGGGAAGATGATGGGGTGCTAGTTAGCTCGATTGATATGGACATTTTTTGA 2850 0.4049 MEKLNLSAKYDPDAKSDSFPIFELQDSQNVVIAPSNSASSREPVNKWMAFAKMPDGNSATKEKSVTQQVNDLKNQPSPDDQILTEAAIAERTAEWGLVVNTGNFKAIGGENNNSDRFGESTRTSGESNYGSESSSGVFPRVSQELKEALATLQQTFVVSDATKPDCPIMYASSGFFTMTGYSSKEIIGRNCRFLQGPETDKNEVAKIRDSTANGRSYCGRLLNYKKDGTPFWNLLTITPIKDDLGNTIKFIGMQVEVSKYTEGVNEKALRPNGLPKSLIRYDARQKEKALGSITEVVQTVKDPKSIIKDMNDDSSTKIEEAEKLNFEFVLPKSADVGNTSTAVRQTSPLNMQRMSSSQDKNKSSRKSGRISFKSFKGKDEEKPTIIEPEVLMTKEIEWANNWELSQRERDIRQGIDLATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQTTVARIRDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLKNRLSETTEQQSAKLVKATAENVDEAVRELPDANLRPEDLWAIHSQTVFPRPHKKNNTSWIAIQKIAARGEKIGLQHFSPIRPLGCGDTGSVHLVELKGTDELYAMKAMEKTVMLNRNKVHRSCIEREIISLLDHPFLPTLYTSFQTSTHVCLITDFCHGGELFALLDKQPMKIFREESARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTNCKPQVVKQSLPGKRRSRSQPPPTFVAEPVTQSNSFVGTEEYIAPEIITGAGHTSAIDWWTLGILLYEMLYGRTPFRGKNRQKTFSNILHKDLTFPSSIPASLAARQLINALLQRDPGSRLGSTTGANEIKQHPFFRGINWPLIRNMTPPPLDVPLRLIGKEPVAKDLKWEDDGVLVSSIDMDIF 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00853 949 PANTHER FLIPPASE KINASE 1-RELATED 95 948 - -
Cca11g00853 949 ProSitePatterns Protein kinases ATP-binding region signature. 620 643 IPR017441 GO:0005524
Cca11g00853 949 CDD PAS 436 528 IPR000014 -
Cca11g00853 949 Gene3D PAS domain 155 328 - -
Cca11g00853 949 Pfam PAS domain 436 528 IPR000014 -
Cca11g00853 949 Pfam PAS domain 162 258 IPR000014 -
Cca11g00853 949 SMART pas_2 143 212 IPR000014 -
Cca11g00853 949 SMART pas_2 415 484 IPR000014 -
Cca11g00853 949 MobiDBLite consensus disorder prediction 108 136 - -
Cca11g00853 949 ProSiteProfiles PAC domain profile. 487 541 IPR000700 -
Cca11g00853 949 Gene3D Phosphorylase Kinase; domain 1 613 697 - -
Cca11g00853 949 PANTHER BNAA02G07840D PROTEIN 95 948 - -
Cca11g00853 949 SMART serkin_6 614 900 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00853 949 TIGRFAM sensory_box: PAS domain S-box protein 439 530 IPR000014 -
Cca11g00853 949 TIGRFAM sensory_box: PAS domain S-box protein 167 258 IPR000014 -
Cca11g00853 949 CDD STKc_phototropin_like 612 923 - -
Cca11g00853 949 ProSitePatterns Serine/Threonine protein kinases active-site signature. 735 747 IPR008271 GO:0004672|GO:0006468
Cca11g00853 949 MobiDBLite consensus disorder prediction 339 379 - -
Cca11g00853 949 SUPERFAMILY PYP-like sensor domain (PAS domain) 432 528 IPR035965 -
Cca11g00853 949 Gene3D PAS domain 403 566 - -
Cca11g00853 949 MobiDBLite consensus disorder prediction 773 793 - -
Cca11g00853 949 ProSiteProfiles PAC domain profile. 215 269 IPR000700 -
Cca11g00853 949 MobiDBLite consensus disorder prediction 359 379 - -
Cca11g00853 949 Pfam Protein kinase domain 617 900 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00853 949 Gene3D Transferase(Phosphotransferase) domain 1 698 914 - -
Cca11g00853 949 ProSiteProfiles PAS repeat profile. 141 214 IPR000014 -
Cca11g00853 949 ProSiteProfiles Protein kinase domain profile. 614 900 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00853 949 MobiDBLite consensus disorder prediction 339 358 - -
Cca11g00853 949 ProSiteProfiles PAS repeat profile. 413 486 IPR000014 -
Cca11g00853 949 SMART pac_2 490 532 IPR001610 -
Cca11g00853 949 SMART pac_2 218 260 IPR001610 -
Cca11g00853 949 CDD PAS 168 257 IPR000014 -
Cca11g00853 949 SUPERFAMILY PYP-like sensor domain (PAS domain) 162 254 IPR035965 -
Cca11g00853 949 SUPERFAMILY Protein kinase-like (PK-like) 592 921 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00853 Cca-Chr11 16940311 16962479 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00853 86 948 AGC Kinase Gene Family AT5G58140 74.943 0.0 1318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Cca11g00853 Pkinase 1.4e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00853 K20715 - gmx:100820096 1658.27