Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00838 ATGGATTCTGTTCTCTCCATGGACACCAACACTAACGCCTTCCCTCATTCACCGCCGCTACCAGAACCAGACATTTCCTCGACGCTACCCACGCCGCACTCACAACCTTCGATTTTGGTCCCAAAGTCCGAACCCTTCTGGGACGCCGACGACCTCTCCGCCGAACTCGACCTCCTCTCCGAGTTCAACCGCGTCTCCGAGCTTTTCCATTTCGCCTTCGGAGCCACCCACGTTGATTTCCAACCGCCCAATGTTTCATGCCCCGACCCCGACGCCGACGCAATGGTTCCGCCAAACCCTAGCGAGGTGAATTCGGTGCCTGCGGACCCTAATGCGGGTTCCGCCGATGATTTGCGGGCGATTGTGCCGGTGCCTGCggcggggacggtggcggtggcggtggcgaggcggggCAAGAGCCGGAAGAAGGAGCTCGTGAGGGTGTCGAACATGTCTGCGAGGGACGAGGCGCAGTTTCGGGAGATTGTGAGGAGGACGCGCCTGCTGTACGACTCGCTGCGCGTGCTGAcggcggtggaggaggagaagcgagcggcggcggcggcggagacgctggagggaggcggcagagcgcggcggctccgcggcgacgcgcgagctgcggcgctgatgcggcagcgtgggctgtggcTGAATCGCGACAAGCGGATTGTGGGGCCAATTCCGGGAATCTTTGTTGGGGATTTGTTCCTTTTTCGAATGGAGTTGTGTGTGGTTGGGTTGCACGGTCAGGTGCAGGCTGGGATTGATTATCTCCCTGGGAACATGAGTGCCACTGGGGAGCCTATAGCCACGAGTGTCATTGTTTCTGGTGGGTatgaggatgatgctgatgatggtgaGGTTATTGTCTACACTGGCCATGGAGGCCAGGGGAAGAATTCTTCCAAGCAGGTTGCTGATCAGAGGTTGGTGTCTGGGAACCTTGCATTGGAGAGGAGTAGGCATTATGGCGTTGAGGTGAGGGTTATTCGCGGGATTAGGTACGAGGGGGGTGTCTCTGGTTCTGGTAAGGTTTATGTGTATGATGGAGTTTATAAGATTGTTGATCATTGGTTTGAGTTTGGCAAGTCTGGTTTTAGAGTTTACAAGTTTAGGCTTTGTAGGATTCCCGGGCAGGCTAAGATGGGTAGTGCTGTTTTGAAGGAGGCTAGGAATATTAGGAGGAGTGGCTTGGATTTTAATCATGTGTTTTGTCTTGCTGCTGATATGTCCAACAGGAAGGAGAATGTTCCGGTTCGGCTTTTTAACGACATAGATGACGACCGGGGTCCTCTTTGTTATGAGTATCTTTCCAGGACTAGTTTTCCGCAGTTTGTGTTTCACCAGAGTGGGAAGGCTACtggttgtgattgtgtggatggttgtggtgatgggtgCTTCTGTGCTATGAAAAATGGGGGTGAGTTTCCTTATACTCTTCAGGGGCATCTTGTGAGGGGGAAGCCTTTGATTTTTGAATGTGGCCCTTTCTGCTCTTGCCCTCCTCATTGTCGCAATCGCGTTGCACAGAAGGGGCTGAAAAATAGGTTGGAGGTGTTTAGGTCTCAGCAGACCGCTTGGGGAGTTAGGTCCTTGGATCTTATTCTAGCTGGTGCTTTTATCTGCGAGTTTGCAGGGGTTGTTTTGACTAGGCAGCAAGCGCAGCTCTTGACAATGAATGGTGACTCGTTGATATATCCTAATCGGTTTTCTGAAAGATGGGCAGAATGGGGGGATTTGTCTCAGATTTACCCACAGTATGCGCGACCATCATATCCATCAATTCCTCCTTTGGATTTTTCTCTGGATGTGTCAACAATGAGGAATGCTGCTTGCTATATGAGCCATAGTTCAACTCCAAATGTCTTGGTTCAGTTTGTTCTGTATGATCACAACAATTTGATGTTCCCTCACGTTATGCTTTTTCCAATGGAGAACATCCCTCCCATGAGAGAGCTCAGTCTTGACTATGGTGTAGCTGATGAGTGGACAGGCAAGCTCTCTATATGTAACTGA 2019 0.4482 MDSVLSMDTNTNAFPHSPPLPEPDISSTLPTPHSQPSILVPKSEPFWDADDLSAELDLLSEFNRVSELFHFAFGATHVDFQPPNVSCPDPDADAMVPPNPSEVNSVPADPNAGSADDLRAIVPVPAAGTVAVAVARRGKSRKKELVRVSNMSARDEAQFREIVRRTRLLYDSLRVLTAVEEEKRAAAAAETLEGGGRARRLRGDARAAALMRQRGLWLNRDKRIVGPIPGIFVGDLFLFRMELCVVGLHGQVQAGIDYLPGNMSATGEPIATSVIVSGGYEDDADDGEVIVYTGHGGQGKNSSKQVADQRLVSGNLALERSRHYGVEVRVIRGIRYEGGVSGSGKVYVYDGVYKIVDHWFEFGKSGFRVYKFRLCRIPGQAKMGSAVLKEARNIRRSGLDFNHVFCLAADMSNRKENVPVRLFNDIDDDRGPLCYEYLSRTSFPQFVFHQSGKATGCDCVDGCGDGCFCAMKNGGEFPYTLQGHLVRGKPLIFECGPFCSCPPHCRNRVAQKGLKNRLEVFRSQQTAWGVRSLDLILAGAFICEFAGVVLTRQQAQLLTMNGDSLIYPNRFSERWAEWGDLSQIYPQYARPSYPSIPPLDFSLDVSTMRNAACYMSHSSTPNVLVQFVLYDHNNLMFPHVMLFPMENIPPMRELSLDYGVADEWTGKLSICN 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00838 672 Gene3D - 223 384 IPR036987 -
Cca11g00838 672 SUPERFAMILY PUA domain-like 207 390 IPR015947 -
Cca11g00838 672 Gene3D SET domain 385 672 IPR046341 -
Cca11g00838 672 MobiDBLite consensus disorder prediction 1 15 - -
Cca11g00838 672 Pfam Pre-SET motif 412 508 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca11g00838 672 SMART G9a_1 221 380 IPR003105 -
Cca11g00838 672 MobiDBLite consensus disorder prediction 1 37 - -
Cca11g00838 672 Pfam SAD/SRA domain 225 380 IPR003105 -
Cca11g00838 672 SUPERFAMILY SET domain 402 671 IPR046341 -
Cca11g00838 672 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 48 672 IPR025794 GO:0016571
Cca11g00838 672 ProSiteProfiles SET domain profile. 516 659 IPR001214 GO:0005515
Cca11g00838 672 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 37 669 - -
Cca11g00838 672 SMART preset_2 408 500 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca11g00838 672 ProSiteProfiles YDG domain profile. 226 376 IPR003105 -
Cca11g00838 672 SMART set_7 516 665 IPR001214 GO:0005515
Cca11g00838 672 Pfam SET domain 528 659 IPR001214 GO:0005515
Cca11g00838 672 ProSiteProfiles Pre-SET domain profile. 455 513 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca11g00838 672 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 37 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00838 Cca-Chr11 16293087 16299027 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00838 133 661 Su(var)3-9 homologs AT5G04940 36.881 1.79e-104 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca11g00838 SAD_SRA 3e-46 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00838 K11420 - gmx:100785015 964.14