LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca11g00832	ATGTCAACGccatcaccttcaccattgttatcaccatcaccacaactctcttccgatgcaccttcaccttcatctatgccaacatcatcgccatcccaGTCTCTGGTTCCGGCGACTCTGTTGGcaccaccatcattgtcatcaccatcaccgtcgccaATAATGCCACCACAATCGTGGGCATCAACTTCTCCTCCTCCAGCAGCCCCACCACCTCCTCGGAGTTCTTCTCCTTCTCCAACATCTACTACACCTACAAGTAGTAGTGCATCTCCTCCTCCTCCTCCAGCTAGGATAAGTCCTTTTGATTCTCATTCTACTCCATCACACTCTTCTTCTGGATTGGTTCCACAACCTCCATCAGCACAAAATTCTGGCCTTGGAAGCAGTGGTGGAACTAGTGCAATGGCTGTTGGAGTAGTGACAGGACTTCTCCTGCTTGGCTTCATTGGCATTGCTATCTGGTGCATGAGGAGGCAAAAGGAAAAGATTTCTAAGATTGGTGGTTATGGCTCGCCAGCCCCTCTTGGCTCATCACCTGAAACAGAGTTGTCCTTTATCAAGATTCGTTCTTCAGCTCCTCTCATACAAAGAGCATCCGGGGTTAATACACCATCATCAGGACTAGGCAACTCAAGGTCATTGTTTGCATATGAAGAACTAAAGAAGGCCACAAACAGTTTTTCAACTCAAAATCTTTTGGGAGAGGGCGGATTTGGTTGCGTGTATAAAGGGTCACTTCAAGATGGGAGAGAGGTAGCAGTTAAGCAACTGAAAATTGAAGGAGGTCAGGGTGAGAGAGAATTCAAAGGTGAAGTTGAAATCATTAGCCGCATACATCATCGTCATTTGGTTTCTTTGGTGGGATACTGCATTTCAGATAACAGAAGATTACTTGTCTATGACTATGTCCCCAATAATACCCTTTATTTTCATCTTCATGGGGAAGGTAGGCCACTGCTGGAATGGGAAAAACGTGTTAAAATTGCGGCTGGAGCAGCTAGAGGAATAGCTTATCTTCATGAAGATTGCAATCCACGGATTATTCACAGGGATATCAAGTCATCAAATATTCTTTTAGACTACAACTTTGAAGCTCGAGTCTCAGATTTTGGGCTAGCCAAATTAGCTGATGCAAATACACATGTAACCACGCGTGTTATGGGAACTTTTGGATATGTGGCACCTGAATATGTATCAAGTGGTAAATTGACTGAGAAATCAGATGTATACTCTTTTGGAGTCATGCTTTTGGAGCTCATTACTGGAAGGAAGCCAGTAGACATATCTCAACCAGTTGGAGAAGAGAGCCTTATTGAATGGGCTCGACCTTTGCTAAATGATGCACTAGATAGCGAGGAATTTGAGAGTTTAACAGATCCAAAGCTAGGAAAGAACTATGTTCAAAGTGAAATGTTTTGCATGATTGAAGTTGCTGCTGCTTGCGTGCGTTATTCATCTGCCAAAAGACCTCGTATGGGACAGGTTGTTAGAGCTTTTGATAGTTTAGCTACTTGTGATCTTTCAAATGGAATGAGAGTTGGGGACTCTGCGCAGCAATCTGCAGATATTAGATTGTTTCGTATAATGGCATTTGGATTTGGTAGTCAAGATTATAACTCAGACTTTTTAAGCCACATAGTTTGA	1647	0.3977	MSTPSPSPLLSPSPQLSSDAPSPSSMPTSSPSQSLVPATLLAPPSLSSPSPSPIMPPQSWASTSPPPAAPPPPRSSSPSPTSTTPTSSSASPPPPPARISPFDSHSTPSHSSSGLVPQPPSAQNSGLGSSGGTSAMAVGVVTGLLLLGFIGIAIWCMRRQKEKISKIGGYGSPAPLGSSPETELSFIKIRSSAPLIQRASGVNTPSSGLGNSRSLFAYEELKKATNSFSTQNLLGEGGFGCVYKGSLQDGREVAVKQLKIEGGQGEREFKGEVEIISRIHHRHLVSLVGYCISDNRRLLVYDYVPNNTLYFHLHGEGRPLLEWEKRVKIAAGAARGIAYLHEDCNPRIIHRDIKSSNILLDYNFEARVSDFGLAKLADANTHVTTRVMGTFGYVAPEYVSSGKLTEKSDVYSFGVMLLELITGRKPVDISQPVGEESLIEWARPLLNDALDSEEFESLTDPKLGKNYVQSEMFCMIEVAAACVRYSSAKRPRMGQVVRAFDSLATCDLSNGMRVGDSAQQSADIRLFRIMAFGFGSQDYNSDFLSHIV	548

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cca11g00832	548	SUPERFAMILY	Protein kinase-like (PK-like)	211	498	IPR011009	-
Cca11g00832	548	MobiDBLite	consensus disorder prediction	87	101	-	-
Cca11g00832	548	Gene3D	Transferase(Phosphotransferase) domain 1	304	518	-	-
Cca11g00832	548	MobiDBLite	consensus disorder prediction	44	79	-	-
Cca11g00832	548	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	29	539	-	-
Cca11g00832	548	CDD	STKc_IRAK	234	503	-	-
Cca11g00832	548	MobiDBLite	consensus disorder prediction	12	43	-	-
Cca11g00832	548	MobiDBLite	consensus disorder prediction	1	131	-	-
Cca11g00832	548	ProSitePatterns	Protein kinases ATP-binding region signature.	234	256	IPR017441	GO:0005524
Cca11g00832	548	ProSiteProfiles	Protein kinase domain profile.	228	503	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca11g00832	Cca-Chr11	16142695	16147439	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca11g00832	126	544	Trihelix Transcription Factor Family	AT5G38560	62.385	0.0	550

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Cca11g00832		Pkinase	1e-46	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca11g00832	-		-	gmx:100799296	723.005

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