Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00832 ATGTCAACGccatcaccttcaccattgttatcaccatcaccacaactctcttccgatgcaccttcaccttcatctatgccaacatcatcgccatcccaGTCTCTGGTTCCGGCGACTCTGTTGGcaccaccatcattgtcatcaccatcaccgtcgccaATAATGCCACCACAATCGTGGGCATCAACTTCTCCTCCTCCAGCAGCCCCACCACCTCCTCGGAGTTCTTCTCCTTCTCCAACATCTACTACACCTACAAGTAGTAGTGCATCTCCTCCTCCTCCTCCAGCTAGGATAAGTCCTTTTGATTCTCATTCTACTCCATCACACTCTTCTTCTGGATTGGTTCCACAACCTCCATCAGCACAAAATTCTGGCCTTGGAAGCAGTGGTGGAACTAGTGCAATGGCTGTTGGAGTAGTGACAGGACTTCTCCTGCTTGGCTTCATTGGCATTGCTATCTGGTGCATGAGGAGGCAAAAGGAAAAGATTTCTAAGATTGGTGGTTATGGCTCGCCAGCCCCTCTTGGCTCATCACCTGAAACAGAGTTGTCCTTTATCAAGATTCGTTCTTCAGCTCCTCTCATACAAAGAGCATCCGGGGTTAATACACCATCATCAGGACTAGGCAACTCAAGGTCATTGTTTGCATATGAAGAACTAAAGAAGGCCACAAACAGTTTTTCAACTCAAAATCTTTTGGGAGAGGGCGGATTTGGTTGCGTGTATAAAGGGTCACTTCAAGATGGGAGAGAGGTAGCAGTTAAGCAACTGAAAATTGAAGGAGGTCAGGGTGAGAGAGAATTCAAAGGTGAAGTTGAAATCATTAGCCGCATACATCATCGTCATTTGGTTTCTTTGGTGGGATACTGCATTTCAGATAACAGAAGATTACTTGTCTATGACTATGTCCCCAATAATACCCTTTATTTTCATCTTCATGGGGAAGGTAGGCCACTGCTGGAATGGGAAAAACGTGTTAAAATTGCGGCTGGAGCAGCTAGAGGAATAGCTTATCTTCATGAAGATTGCAATCCACGGATTATTCACAGGGATATCAAGTCATCAAATATTCTTTTAGACTACAACTTTGAAGCTCGAGTCTCAGATTTTGGGCTAGCCAAATTAGCTGATGCAAATACACATGTAACCACGCGTGTTATGGGAACTTTTGGATATGTGGCACCTGAATATGTATCAAGTGGTAAATTGACTGAGAAATCAGATGTATACTCTTTTGGAGTCATGCTTTTGGAGCTCATTACTGGAAGGAAGCCAGTAGACATATCTCAACCAGTTGGAGAAGAGAGCCTTATTGAATGGGCTCGACCTTTGCTAAATGATGCACTAGATAGCGAGGAATTTGAGAGTTTAACAGATCCAAAGCTAGGAAAGAACTATGTTCAAAGTGAAATGTTTTGCATGATTGAAGTTGCTGCTGCTTGCGTGCGTTATTCATCTGCCAAAAGACCTCGTATGGGACAGGTTGTTAGAGCTTTTGATAGTTTAGCTACTTGTGATCTTTCAAATGGAATGAGAGTTGGGGACTCTGCGCAGCAATCTGCAGATATTAGATTGTTTCGTATAATGGCATTTGGATTTGGTAGTCAAGATTATAACTCAGACTTTTTAAGCCACATAGTTTGA 1647 0.3977 MSTPSPSPLLSPSPQLSSDAPSPSSMPTSSPSQSLVPATLLAPPSLSSPSPSPIMPPQSWASTSPPPAAPPPPRSSSPSPTSTTPTSSSASPPPPPARISPFDSHSTPSHSSSGLVPQPPSAQNSGLGSSGGTSAMAVGVVTGLLLLGFIGIAIWCMRRQKEKISKIGGYGSPAPLGSSPETELSFIKIRSSAPLIQRASGVNTPSSGLGNSRSLFAYEELKKATNSFSTQNLLGEGGFGCVYKGSLQDGREVAVKQLKIEGGQGEREFKGEVEIISRIHHRHLVSLVGYCISDNRRLLVYDYVPNNTLYFHLHGEGRPLLEWEKRVKIAAGAARGIAYLHEDCNPRIIHRDIKSSNILLDYNFEARVSDFGLAKLADANTHVTTRVMGTFGYVAPEYVSSGKLTEKSDVYSFGVMLLELITGRKPVDISQPVGEESLIEWARPLLNDALDSEEFESLTDPKLGKNYVQSEMFCMIEVAAACVRYSSAKRPRMGQVVRAFDSLATCDLSNGMRVGDSAQQSADIRLFRIMAFGFGSQDYNSDFLSHIV 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00832 548 SUPERFAMILY Protein kinase-like (PK-like) 211 498 IPR011009 -
Cca11g00832 548 MobiDBLite consensus disorder prediction 87 101 - -
Cca11g00832 548 Gene3D Transferase(Phosphotransferase) domain 1 304 518 - -
Cca11g00832 548 MobiDBLite consensus disorder prediction 44 79 - -
Cca11g00832 548 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 29 539 - -
Cca11g00832 548 CDD STKc_IRAK 234 503 - -
Cca11g00832 548 MobiDBLite consensus disorder prediction 12 43 - -
Cca11g00832 548 MobiDBLite consensus disorder prediction 1 131 - -
Cca11g00832 548 ProSitePatterns Protein kinases ATP-binding region signature. 234 256 IPR017441 GO:0005524
Cca11g00832 548 ProSiteProfiles Protein kinase domain profile. 228 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00832 548 Gene3D Phosphorylase Kinase; domain 1 196 303 - -
Cca11g00832 548 PANTHER BNACNNG34790D PROTEIN 29 539 - -
Cca11g00832 548 Pfam Protein kinase domain 229 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00832 548 ProSitePatterns Serine/Threonine protein kinases active-site signature. 348 360 IPR008271 GO:0004672|GO:0006468
Cca11g00832 548 SMART serkin_6 228 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00832 548 MobiDBLite consensus disorder prediction 102 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00832 Cca-Chr11 16142695 16147439 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00832 126 544 Trihelix Transcription Factor Family AT5G38560 62.385 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Cca11g00832 Pkinase 1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00832 - - gmx:100799296 723.005