Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00830 atgcccaagacgggtattcctgttgctgagcaggggacgcttgctgcagcttctactgctgccgaggctcgtggcaaggggccgagttctgaggttccagtggcgacgcctacagtctcggcgctgtcatctggtccattgcagggggcctcccggagtcgatacattgcccaccgcttcgggaaggaccgctctaaggtgcgattggaccatgtgagtgcctctgctgacatggattcgctgtggagtgcgggggtgaccgccgagaagttctttcccaagggttcgctgagcttggaggaccaggggatgatcaaagaggtcgagcccgtggaaggtcttgacgctgcccaggttcatgacttgcaagaactctccagctcttccctggctcgagttcgcgccttggaggatgaggtcaccgcgcagaaggccgagttggtggcggcgaccaagaagcgtctttgtgacgaggtgcttctcggcggacaagcagaggagaatgctgctctgaaggtggacctggcaagGAACAGGTGGGGTGGGAAAGTGGGGGACCCGCATTTTAGCCAGATGGGAATAGTAGTGTTTGCTTCCGACTATGCGGGAATTTCTGCTGAGCCAATCTCTACTCCGGATACCGCTTTACCCTACGGTGAAATATTCAGCGTTGGATTGGACGGGGTTATCAAAAAGTACATAGGTGAGCACAAAGAACAATGTACCTCATGCACAAGGCATTGGCTAGGAAGAATCAGTAATTTATTTGCTGCAAGGAACATAGCCACAAATATAGAGACAAGATCAGTGTGTGGTCCAAAAATGTACGAAGAAAGTGGTTGCTTTGATCCCAATGCAATGATGGCACAGGGCACAGAAGAATGCTTCCCCCAAATGGTTTCGGTGTCAGAGGCAGCACTTGAGGCAGTTATGACTGCCACTGCAACACAATCTCAAAGCATGTTTGCGGTGGAAAACTTACCCTTACCCTACTCATACTCCAGTGGAGAAGATGCTGCAATGGAGATCAATGCACAAAAACCATACAATCATATCCATAACTTGAAGACCCAGTTAGTGGAATTGGCGAATCATGGTGATGATGGTTCAAGTCATGAGCTTTATTCCTTTCCCCTCCAACACCAGAATCATCAATTTCCTTATCCCACACCAACACCAGATCTCCTTAACCTTCTCCACTTGCCAAGAAACTCCCTTGAAAACCCAACCAATAGCACAAACATTTCCTCTCTTTCCTATGACCCTTTCTTGCATCTCAACCTGCAACCACCTCCCCAAGCTGCACTCAGAGAGTTGCTTCCACACATGCCAGCTCCAAGAAATGATTTTGCATTTGAAGGAAGTGGAGTTGGCTTTCATCAAGATTTTGGAAATGAGTTCACTCAAGATGTGAGCTATGTAGGGAAAAAGAGAGGGGGCAAAAGGACCAAGCTGTTTACCAGTACCACTGAGAGACAAAGGAGAGTGGATTTGAGTAGTAAATTTGATGCTTTGAAGGAACTCATCCCAAACCCCTCCAAGAGTGATAGAGCATCGGTGGTGGGAGATGCTATTGACTATATTAGAGAACTTTTGAGGACAGTGAACGAACTGAAATTATTGGCGGAGAAGAAAAGGCACGAGAAACAAAGGGTGATGATGATGATGAGGCACAGGGTTGAAACTGAAGGTGAGTCCAAGCTTGAAGCAGTTGGTGACCCAGATGATGGTTCCTACAGTGAAAGCTTGAGAAGTTCATGGATACAAAGGAAATCCAAAGACACCGAGGTTGATGTGCGCATTGTTGACAACGAGGTAACAATTAAGCTTGTTCAGAGGAAGAAGGTCGATTGCTTGGTGCATGTCTCACACGCTCTGGATGAACTTAACTTGGATCTCCAACATGTTGCTGGTGGCCACATTGGCGATTTCTGCAGCTATCTCTTCAATACCAAGATATGTGAAGGTTCCTCAGTTTATGCGAGTGCCATAGCCAACAAGGTCATTGAGGTCATGGACGCAAGTTTTGCAGCAGCTTGA 2040 0.3333 MPKTGIPVAEQGTLAAASTAAEARGKGPSSEVPVATPTVSALSSGPLQGASRSRYIAHRFGKDRSKVRLDHVSASADMDSLWSAGVTAEKFFPKGSLSLEDQGMIKEVEPVEGLDAAQVHDLQELSSSSLARVRALEDEVTAQKAELVAATKKRLCDEVLLGGQAEENAALKVDLARNRWGGKVGDPHFSQMGIVVFASDYAGISAEPISTPDTALPYGEIFSVGLDGVIKKYIGEHKEQCTSCTRHWLGRISNLFAARNIATNIETRSVCGPKMYEESGCFDPNAMMAQGTEECFPQMVSVSEAALEAVMTATATQSQSMFAVENLPLPYSYSSGEDAAMEINAQKPYNHIHNLKTQLVELANHGDDGSSHELYSFPLQHQNHQFPYPTPTPDLLNLLHLPRNSLENPTNSTNISSLSYDPFLHLNLQPPPQAALRELLPHMPAPRNDFAFEGSGVGFHQDFGNEFTQDVSYVGKKRGGKRTKLFTSTTERQRRVDLSSKFDALKELIPNPSKSDRASVVGDAIDYIRELLRTVNELKLLAEKKRHEKQRVMMMMRHRVETEGESKLEAVGDPDDGSYSESLRSSWIQRKSKDTEVDVRIVDNEVTIKLVQRKKVDCLVHVSHALDELNLDLQHVAGGHIGDFCSYLFNTKICEGSSVYASAIANKVIEVMDASFAAA 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00830 679 MobiDBLite consensus disorder prediction 16 47 - -
Cca11g00830 679 PANTHER TRANSCRIPTION FACTOR BHLH91 275 678 IPR045895 GO:0006355|GO:0048658
Cca11g00830 679 CDD bHLH_AtMYC1_like 487 547 IPR045896 -
Cca11g00830 679 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 481 555 IPR036638 GO:0046983
Cca11g00830 679 Coils Coil 528 548 - -
Cca11g00830 679 MobiDBLite consensus disorder prediction 33 47 - -
Cca11g00830 679 SMART finulus 488 537 IPR011598 GO:0046983
Cca11g00830 679 Gene3D - 480 556 IPR036638 GO:0046983
Cca11g00830 679 Pfam Helix-loop-helix DNA-binding domain 490 531 IPR011598 GO:0046983
Cca11g00830 679 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 482 531 IPR011598 GO:0046983
Cca11g00830 679 Coils Coil 133 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00830 Cca-Chr11 16071115 16082643 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00830 275 679 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 39.216 2.69e-78 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca11g00830 HLH 7.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00830 - - vra:106767981 496.893