LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca11g00824	ATGGATggagccaccggcggcgccggcagcggcagcggcgaagtgtcgacggcagcgccggcgccggcgccgATTCCAAACGCGAACGCGCCGGCGCCGTTCCTGAGCAAGACGTACGAGATGGTGGACGATCCTTCGACGGACTCGGTGGTGTCGTGGAGCCCTACGGACAACAGCTTCGTGGTTTGGAACCCTCCGGAGTTCGCCAGAGACCTCTTGCCCAAACACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAGTTGAACACCTATGGTTTTAGGAAGGTAGATCCAGATCGCTGGGAATTTGCAAATGAGGGATTTTTAAGGGGGCAAAAGCACTTGCTTAAGTTTATAACTAGGCGAAAACCTGCCCATGGTCATAATCATCAGCAGGCACAGCAATCCCATGGACAGAGTTCTTCGGTTGGCGCTTGTGTAGAAGTTGGGAAGTTTGGACTTGAGGAAGAGGTTGAGATTCTCAAGAGAGATAAGAATGTGCTCATGCAAGAGCTTGTGAGATTGAGGCAGCAGCAACAAGCTACTGATAACCAGCTGCAGACAATGGTTCAGCGGCTTCAGGGAATGGAGCAACGGCAGCAACAAATGATGTCATTCCTTGCAAAGGCTGTTCAGAGCCCTGGTTTCTTAGCTCAATTTGTACAGCAAAATGATAGTAATAGACGCATAACAGAGGCAAACAAAAAACGTCGGCTTAAGCAGGAAGGTATCGGTGAAATGGAACATAATGCTTCTTCTGATGGGCAAATTGTTAAATATCAACCTCTGGTAAATGAAGCAGCAAAAGCAATGCTAAGGCAGATAATGAAATTGGATACATCTCGACTAGACTCTTTCAGTAATAGCCCTGATAATTACTTGATTGGTGATCATTCATCATCATCCAGTGCAATGGACATGGGAAACTCTTTGAGCCGAACTTCTGGAGTAACCCTTCAAGAAGTCCCTCCGACTGCAGCACAATCTTGTCACGTTCCATCTGCAACAGGGACTCAAGGACAAGGCCTTTCAACAGAAAAATCTGAGATTCCATCTTTCCCCCAAGTTGCACCCTGTGAAGAAGTTGCGAAAGCTCAGTACCCTAATATAAATGTTTCGGTTGGAGAACCTAATGCAACTGCTATACCAGTTACTCAAACAAATGAAATCATGCCAGACCTCTCTCCAATACCAGATATGGTGGCAGGAAATATTCTTGATATTGCTGAAGAAAATTATTTGGCACCTGAGACAGGCAGTGGCGGATATATAGATCCTACTTCATTGGGAGTGAATGGGTCATTGTCCATTGATTTTGATAGTATTTCCCCTGAAACAGACATTGATGATTTGTTTAACAATCCTCACTTTTGGGATGATATTGTGCGAACTCCTGTGTCAGAGGAGATCGAGACGAATGGTGCTGAAGTATGCATGGAGAATGAAGTTCAACCAATGGAAAATGGATGGGACAAATCTCAACATATGGACCAACTTACTGAGCAGATGGGCCTACTTTCTTCTGATACAGAAAGAATTTAA	1545	0.4265	MDGATGGAGSGSGEVSTAAPAPAPIPNANAPAPFLSKTYEMVDDPSTDSVVSWSPTDNSFVVWNPPEFARDLLPKHFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKFITRRKPAHGHNHQQAQQSHGQSSSVGACVEVGKFGLEEEVEILKRDKNVLMQELVRLRQQQQATDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFLAQFVQQNDSNRRITEANKKRRLKQEGIGEMEHNASSDGQIVKYQPLVNEAAKAMLRQIMKLDTSRLDSFSNSPDNYLIGDHSSSSSAMDMGNSLSRTSGVTLQEVPPTAAQSCHVPSATGTQGQGLSTEKSEIPSFPQVAPCEEVAKAQYPNINVSVGEPNATAIPVTQTNEIMPDLSPIPDMVAGNILDIAEENYLAPETGSGGYIDPTSLGVNGSLSIDFDSISPETDIDDLFNNPHFWDDIVRTPVSEEIETNGAEVCMENEVQPMENGWDKSQHMDQLTEQMGLLSSDTERI	514

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca11g00824	514	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-1	7	500	-	-
	Cca11g00824	514	MobiDBLite	consensus disorder prediction	1	30	-	-
	Cca11g00824	514	ProSitePatterns	HSF-type DNA-binding domain signature.	73	97	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Cca11g00824	514	Gene3D	-	27	124	IPR036388	-
	Cca11g00824	514	MobiDBLite	consensus disorder prediction	322	351	-	-
	Cca11g00824	514	Pfam	HSF-type DNA-binding	34	123	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Cca11g00824	514	Coils	Coil	152	179	-	-
	Cca11g00824	514	SUPERFAMILY	"Winged helix" DNA-binding domain	29	123	IPR036390	-
	Cca11g00824	514	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	7	500	IPR027725	-
	Cca11g00824	514	PRINTS	Heat shock factor (HSF) domain signature	34	57	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Cca11g00824	514	PRINTS	Heat shock factor (HSF) domain signature	72	84	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Cca11g00824	514	PRINTS	Heat shock factor (HSF) domain signature	85	97	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Cca11g00824	514	SMART	hsfneu3	30	123	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca11g00824	Cca-Chr11	15845265	15852424	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca11g00824	1	511	HSF	AT1G32330	50.951	3.08e-166	478

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Cca11g00824		HSF_DNA-bind	2.7e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca11g00824	K09419		-	gmx:732544	783.867