Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00822 ATGAGCTTTCAGGACATCGAGGCTGGCCGGTCCTTCGGTTCCAGGCGCGGGTTGACCAATGGGAAGCAAGACCCTACGCAAGCGGTGGCCGCCGGAATATTCCAGATCAACACCGCCGTCTCCACCTTCCAGAGACTCGTCAACACCCTCGGAACCCCCAAAGACACCCCTGAACTCCGCGAGAAGCTCCACAAGACGAGGCTTCATATTGGGCAATTGGTGAAGGATACATCAGCTAAACTTAAGCAAGCAAGTGACATTGATCACCATGCTGAAGTTAACGCAAGCAAGAAGATCGCAGATGCTAAACTTGCAAAAGATTTTCAGGCAGTTTTGAAAGAGTTTCAGAAGGCACAACGTCTTGCAGCTGAGAGAGAAACAGCATACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCAAGCTATACGGCTAGCGAGTTAGATGTTGGTTCTGATAAGTCAGCAGAACAGCGTGCCCTACTTGTGGAGTCAAGGAGGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATCATTGAGGAAAGGGAGCAAGGCATTCAAGAAATACAACAGCAAATTGGTGAAGTTAATGAAATCTTCAAAGATCTTGCTGTGCTTGTCCATGAGCAAGGAACCATGATTGATGATATTGGCTCCAACATTGAGAACTCCCATGCAGCAACAGCACAAGCAAAATCTCAACTTGCAAAAGCTTCAAAAACCCAAAGATCAAATTCATCTTTGACATGCTTGCTTTTGGTGATATTTGGGATTGTGCTTCTCATCGTGATCATAGTTCTTGCTGCTTAG 822 0.4611 MSFQDIEAGRSFGSRRGLTNGKQDPTQAVAAGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASDIDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTASELDVGSDKSAEQRALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGTMIDDIGSNIENSHAATAQAKSQLAKASKTQRSNSSLTCLLLVIFGIVLLIVIIVLAA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00822 273 SMART tSNARE_6 175 242 IPR000727 -
Cca11g00822 273 CDD SNARE_Qa 200 241 - -
Cca11g00822 273 PANTHER SYNTAXIN OF PLANTS PROTEIN 2 272 - -
Cca11g00822 273 Gene3D - 174 273 - -
Cca11g00822 273 PANTHER SYNTAXIN 2 272 IPR045242 -
Cca11g00822 273 SMART SynN_4 13 127 IPR006011 GO:0016020
Cca11g00822 273 ProSitePatterns Syntaxin / epimorphin family signature. 186 225 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cca11g00822 273 Pfam SNARE domain 216 268 IPR000727 -
Cca11g00822 273 Gene3D - 19 133 - -
Cca11g00822 273 CDD SynN 23 148 IPR006011 GO:0016020
Cca11g00822 273 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Cca11g00822 273 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 180 242 IPR000727 -
Cca11g00822 273 SUPERFAMILY t-snare proteins 23 235 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00822 Cca-Chr11 15824641 15829199 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00822 1 261 SNARE and Associated Proteins AT5G46860 78.161 3.11e-148 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00822 - K08488 gsj:114391232 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00981 06 23563879 23568664 Cca11g00822 11 15824641 15829199 PCT