Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00818 ATGTCAGAACAGGGTTCGTTTTCCGGTGTCACGGGCTCAGAACCCAAAGAGATGAAAAAGAAGGTTCCTTTGCTGAAGCTCTTCTCCTTTGCCGACTTCTACGATTGGGTTTTGATGGGTGTTGGATCTGTTGGGGCATGCGTTCATGGTGCTTCTGTGCCTGTTTTCTTTATCTACTTCGGAAAGATAATCAACGTCATAGGCTTCGCTTACCTTTTTCCCCAAGAAGCTTCCCACAAAGTTGCCAAGTATTCGTTGGATTTTGTGTATCTAAGCATTGTAATATTGTTTTCAGCTTGGATAGAGGTGGCTTGTTGGATGCATACTGGGGAACGTCAAGCTGCAAAGATGAGGATGGCATATTTAAGGGCAATGTTGAATCAAGATATAACTCTTTTTGATACCGAGGCATCAACTGGAGAGGTTATTTCTTCTATTACTAGTAACATCATCGTTGTTCAAGATGCACTGTCTGAGAAGGTTGGGAACTTCATGCACTACATAAGCCGATTTATTGTGGGCTTTACCGTTGGTTTTGTGAGAGTGTGGCAAATCAGTTTAGTGACACTTGCCATTGTACCCTTAATTGCCCTGGCTGGAGGCCTTTACGCATACGTGACAATTGGTCTTATTGGAAAAGTTCGAACAGCGTATGTGAGGGCAGGTGAAATTGCTGAAGAGGTGATAGGCAATGTGAGAACAGTACAAGCATTTGCAGGAGAAGAAAGAGCAGTGATATCATACAAAGCGGCTCTGTTGAAAACATATAAAAATGGTCGAAAAGCAGGTTTAGCAAAGGGTCTGGGACTAGGCTTTATGCATTGTGTGCTTTTCCTATCATGGGCACTTCTTGTTTGGTTCACTAGTATTGTTGTTCATAAGAATATTGCCAATGGTGGCGATGCTTTCACTACCATGCTCAATGTAGTCATCTCTGGCCTGTCACTTGGGCAGGCAGCACCAGATATTTCTGCATTTATCAAAGCAAAGGCAGCAGCTTATCCCATTTTTGAGATGATAGAGAGGGACACAGTGAGCAAAGTCACCCCAGAAAATGGTCAAAAATTAAGCAAATTAGAAGGTCACATCAAATTTATGGATGTCAGTTTTAGTTATCCATCTCGTCCTGATGTGATTATCTTCAACAATTTTTGTCTTGAGATTCCTTCAGGGAAAATTTTAGCCCTTGTGGGAGGAAGTGGTTCTGGAAAGAGCACAGTTATATCATTGATGGAGCGCTTCTATGAACCACTTTCTGGCCAAATACTAATAGATGGGCACAATATCAGGGAACTTGATCTCAAATGGCTTAGACAGCAAATTGGACTGGTTAACCAAGAACCTGCACTTTTTGCTACAAGCATCAGGGAGAACATACTGTATGGAAAAGATGATGCCACTCCGGAAGAAATAAATAAAGCTGTGAGGCTTTCTGATGCTTACACTTTCATTAACAATCTTCCTGATGGATTAGATACTCAGGTTGGTGAGAGAGGGATACAATTATCAGGGGGACAAAAACAAAGGATTGCAATATCTCGTGCTATAGTTAAGAATCCATCAATCCTTTTACTAGATGAAGCAACTAGTGCTTTGGATGCAGAGTCCGAGAAAAGTGTACAGGAGGCTCTTGATCGTGTCATGGTTGGTAGAACAACAGTGATAGTTGCACACAGACTTTCTACCATTAGGAATGCAGATATGATTGTTGTTATTGAGAAAGGGAAGGTGGTCGAAATTGGCAATCATGAGGAACTCATATCCAACCCAAATAGTGTATATGCATCTCTTGTTCAAATCCAACAAACAACCTCTTCTCAAGGCCACCTTTCTGTAGATCCTTACATTGGAGGGTCATCAAGGCGCCTAGGAGAGTCATCATCACGTGGAACAAGCTTTCGTGGTAGTTTTCGTTCTGATAAAGAATCTATTAACCGGGCTTTTGCTGATGGAGAAGAAAGTGTTGGAAGTTCAAGGCGTGTCTCAAATAGAAAACTATATTCCATGATTGGTCCTGACTGGTTTTATGGTGTTTTTGGAACCTTGTGTGCATTTGTTGCTGGAGCACAAATGCCACTTTTTGCTCTTGGAATCTCTCAAGCTCTCGTATCTTATTACATGGACTGGGATACAACACGCCATGAAGTGAAAAAAATTTCTCTCCTCTTCTGTGCGGCTGCAGTTTTAACTGTCATTGCCCATGCCATTGAACATCTTTCCTTTGGAATCATGGGGGAACGACTTACCCTTCGTGTGAGAGAAAAAATGTTTTCTGCTATTTTGAAGAGTGAAATTGGCTGGTTTGATGAATTAAACAACACAAGTTCTATGCTTTCGTCACGTTTAGAGACTGATGCAACATTCTTAAGAACTGTTGTTGTTGATCGTTCAACCATTCTTCTGCAAAATGTTGGTCTGGTTGTTACTTCATTCATTATTGCCTTCATGTTGAATTGGAGGATCACGCTTGTTGTATTGGCCACATACCCTTTGATCATTAGTGGTCACCTTAGCGAGAAACTATTCATGGGAGGATTTGGTGGCAACCTTAGCAAAGCATATCTTAAAGCCAACATGTTGGCTGGGGAGGCTGTGAGTAATATCCGCACTGTGGCTGCATTTTGTGCTGAACAAAAGGTCCTTGACCTTTATGCCAATGAGCTTGTGGAGCCTTCAAAGCGTTCATTCAATCGTGGCCAAATTGCTGGCATATTCTATGGCATTTCCCAGTTCTTTATTTTCTCATCTTATGGCCTTGCCTTGTGGTATGGATCTGTGTTGATGAAAAAGGAGCTTTCTGGCTTCAAATCAATTATGAAGTCATTTATGGTTTTAATCATAACAGCATTAGCTATGGGGGAGACTTTGGCACTGGCACCTGACCTTTTGAAAGGAAATCAAATGGTTGCATCAATTTTCGAATTGATGGATAGAAAGACAGAAATATTGGGTGATGTTGGAGAAGAGCTAAAGACAGTGGAAGGGACAATTGAGCTAAAAAGAATCCATTTCAGCTACCCTTCAAGGCCACATGTGGTTATTTTTAATGATTTCAATCTTACAGTGCCCGCAGGAAAGAATATTGCCTTAGTGGGACATAGTGGTTGTGGTAAAAGCTCAATTATCTCCCTTATACTCAGATTTTATGACCCAACATCTGGGAAGGTGATGATTGATGGAAAAGACATCAAGAAACTCAATTTGAAATCCCTTAGGAAACATATTGGTCTAGTGCAACAAGAACCTACTCTTTTTTCAACATCAATTTATGAAAACATTCTTTATGGAAAGGAAGGAGGCTCGGAATCAGAAGTGATTGAAGCTGCTAAACTTGCCAATGCTCATAACTTTATCAGTGCTCTTCCTGAGGGCTACTCCACCAAAGTAGGTGAGAGAGGGGTTCAACTTTCTGGTGGCCAGAAACAAAGGGTAGCTATTGCCAGGGCTATTTTGAAAAACCCTGAAATTTTGCTGCTAGATGAAGCCACTAGTGCACTGGATTTGGATTCGGAGCGTGTGGTGCAACAAGCTCTAGATAAATTGATGCAGAACAGAACAACAATTATAGTGGCACACAGGCTATCCACAATAAGAAATGCTGACCAAATAGCAGTTTTAGAGGATGGAAAGATAATTGAGCGAGGGACTCATTCAAGACTTGTGGAGAACACAGCGGGAGCATACTACAAATTAGTCAACCTTCAACAACAACAACATAATGAATGA 3726 0.4128 MSEQGSFSGVTGSEPKEMKKKVPLLKLFSFADFYDWVLMGVGSVGACVHGASVPVFFIYFGKIINVIGFAYLFPQEASHKVAKYSLDFVYLSIVILFSAWIEVACWMHTGERQAAKMRMAYLRAMLNQDITLFDTEASTGEVISSITSNIIVVQDALSEKVGNFMHYISRFIVGFTVGFVRVWQISLVTLAIVPLIALAGGLYAYVTIGLIGKVRTAYVRAGEIAEEVIGNVRTVQAFAGEERAVISYKAALLKTYKNGRKAGLAKGLGLGFMHCVLFLSWALLVWFTSIVVHKNIANGGDAFTTMLNVVISGLSLGQAAPDISAFIKAKAAAYPIFEMIERDTVSKVTPENGQKLSKLEGHIKFMDVSFSYPSRPDVIIFNNFCLEIPSGKILALVGGSGSGKSTVISLMERFYEPLSGQILIDGHNIRELDLKWLRQQIGLVNQEPALFATSIRENILYGKDDATPEEINKAVRLSDAYTFINNLPDGLDTQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVIVAHRLSTIRNADMIVVIEKGKVVEIGNHEELISNPNSVYASLVQIQQTTSSQGHLSVDPYIGGSSRRLGESSSRGTSFRGSFRSDKESINRAFADGEESVGSSRRVSNRKLYSMIGPDWFYGVFGTLCAFVAGAQMPLFALGISQALVSYYMDWDTTRHEVKKISLLFCAAAVLTVIAHAIEHLSFGIMGERLTLRVREKMFSAILKSEIGWFDELNNTSSMLSSRLETDATFLRTVVVDRSTILLQNVGLVVTSFIIAFMLNWRITLVVLATYPLIISGHLSEKLFMGGFGGNLSKAYLKANMLAGEAVSNIRTVAAFCAEQKVLDLYANELVEPSKRSFNRGQIAGIFYGISQFFIFSSYGLALWYGSVLMKKELSGFKSIMKSFMVLIITALAMGETLALAPDLLKGNQMVASIFELMDRKTEILGDVGEELKTVEGTIELKRIHFSYPSRPHVVIFNDFNLTVPAGKNIALVGHSGCGKSSIISLILRFYDPTSGKVMIDGKDIKKLNLKSLRKHIGLVQQEPTLFSTSIYENILYGKEGGSESEVIEAAKLANAHNFISALPEGYSTKVGERGVQLSGGQKQRVAIARAILKNPEILLLDEATSALDLDSERVVQQALDKLMQNRTTIIVAHRLSTIRNADQIAVLEDGKIIERGTHSRLVENTAGAYYKLVNLQQQQHNE 1241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00818 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 991 1235 IPR027417 -
Cca11g00818 1241 Pfam ABC transporter 382 530 IPR003439 GO:0005524
Cca11g00818 1241 Pfam ABC transporter 1016 1164 IPR003439 GO:0005524
Cca11g00818 1241 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 997 1233 IPR003439 GO:0005524
Cca11g00818 1241 ProSitePatterns ABC transporters family signature. 502 516 IPR017871 GO:0005524
Cca11g00818 1241 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 678 964 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g00818 1241 SUPERFAMILY ABC transporter transmembrane region 664 981 IPR036640 GO:0005524|GO:0016021
Cca11g00818 1241 Gene3D - 361 628 IPR027417 -
Cca11g00818 1241 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 363 599 IPR003439 GO:0005524
Cca11g00818 1241 SMART AAA_5 390 576 IPR003593 -
Cca11g00818 1241 SMART AAA_5 1024 1210 IPR003593 -
Cca11g00818 1241 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 15 1237 - -
Cca11g00818 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 601 IPR027417 -
Cca11g00818 1241 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 336 - -
Cca11g00818 1241 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 15 1237 IPR039421 -
Cca11g00818 1241 Pfam ABC transporter transmembrane region 679 950 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g00818 1241 Pfam ABC transporter transmembrane region 44 312 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g00818 1241 SUPERFAMILY ABC transporter transmembrane region 17 333 IPR036640 GO:0005524|GO:0016021
Cca11g00818 1241 CDD ABC_MTABC3_MDL1_MDL2 363 601 - -
Cca11g00818 1241 Gene3D - 987 1241 IPR027417 -
Cca11g00818 1241 MobiDBLite consensus disorder prediction 618 637 - -
Cca11g00818 1241 CDD ABC_6TM_Pgp_ABCB1_D2_like 667 982 - -
Cca11g00818 1241 CDD ABC_MTABC3_MDL1_MDL2 997 1235 - -
Cca11g00818 1241 ProSitePatterns ABC transporters family signature. 1136 1150 IPR017871 GO:0005524
Cca11g00818 1241 Gene3D ABC transporter type 1, transmembrane domain 87 966 IPR036640 GO:0005524|GO:0016021
Cca11g00818 1241 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 328 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00818 Cca-Chr11 15673247 15690892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00818 14 1241 Calmodulin-binding Proteins AT2G36910 49.802 0.0 1216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00818 K05658 - gmx:100809752 2105.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00818 11 15673247 15690892 Cca11g00818 11 15673247 15690892 ECH