Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00817 ATGGGTAGGCCACCTTGCTGTAACGAGAGTGGTGTTAAGAAAGGGCCATGGACACTGGAAGAAGATGAAAAGCTAATGGATTATATTAGCAAACATGGAAGGCGAACTTGGAGAACACTTCCAATGCATGCAGGTCTAAATAGGTGCGGGAAAAGTTGCAGGTTAAGGTGGGAAAACTATCTTAGGCCAGATATCAAGAGAGGGAAATTCACTGAAGAAGAGGAGCAATTGATCATCAACCTTCATTCAGTTCTTGGAAACAAGTGGGCAAAGATTGCTACACATCTTCCAGGGAGAACTGACAACGAGATCAAGAATTATTGGAACACCAACATAAGAAAAAAGCTTCTTCAGATGGGTATTGACCCAGAAACTCACAAGCAAAGAACCGACTTCAATCACCTCATGAATCTTTCCCAGTTGCTTGGCATGTCTTTGGGCACATCAATGAGTCCTTGGACCAACCCTCTTGGTTTACAAGCAGATGTCAACACTCAATTAGCCAAACTACAACTACTACAAAATATGTTGCAACTTGTGAACAGCACCAATTCATTGGTTAACATGGGTAACCCTTACCTCTTCAGCAATCAAATTCTCAACGGGACAAACACCTTCCAAGTTGAAGATTCAATCATGAGAGGTCAAGAATGTGTAAACCCTGCTTCTGTATCACTCTCTCAAACACACAGCGACTCTTCTCATCAGAATATTCCAAAACCAGGGACAGAAAAAGAGAGTGAAACTAATCATGAAGTTCTTGGTTATAACCAAAACATCAACACTTTACTGCAAAATGAAGCAGAAAATCTTCTTCCTGCATTAGTAGCAACTTGTCCTAAGAAAACTACCTTAAGCCAAATGGATAACAACTTCAACGCAGCACAAAAGTCAACCGAATCACCTTTCTCCACAACCTTCGAGGCTTGCGAGAAGTTCCTTCTTGATGATGATGAAACAAACGTTTCCTACTGGAAAGAGATTCTAGATATGACATCCACTTCTGCATCACCAGTTTCCTGGTAG 1026 0.4133 MGRPPCCNESGVKKGPWTLEEDEKLMDYISKHGRRTWRTLPMHAGLNRCGKSCRLRWENYLRPDIKRGKFTEEEEQLIINLHSVLGNKWAKIATHLPGRTDNEIKNYWNTNIRKKLLQMGIDPETHKQRTDFNHLMNLSQLLGMSLGTSMSPWTNPLGLQADVNTQLAKLQLLQNMLQLVNSTNSLVNMGNPYLFSNQILNGTNTFQVEDSIMRGQECVNPASVSLSQTHSDSSHQNIPKPGTEKESETNHEVLGYNQNINTLLQNEAENLLPALVATCPKKTTLSQMDNNFNAAQKSTESPFSTTFEACEKFLLDDDETNVSYWKEILDMTSTSASPVSW 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00817 341 Gene3D - 13 66 - -
Cca11g00817 341 CDD SANT 69 112 IPR001005 -
Cca11g00817 341 MobiDBLite consensus disorder prediction 221 249 - -
Cca11g00817 341 CDD SANT 16 61 IPR001005 -
Cca11g00817 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Cca11g00817 341 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca11g00817 341 PANTHER MYB TRANSCRIPTION FACTOR 1 332 - -
Cca11g00817 341 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Cca11g00817 341 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca11g00817 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca11g00817 341 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca11g00817 341 MobiDBLite consensus disorder prediction 221 238 - -
Cca11g00817 341 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Cca11g00817 341 Gene3D - 68 136 - -
Cca11g00817 341 SMART sant 66 114 IPR001005 -
Cca11g00817 341 SMART sant 13 63 IPR001005 -
Cca11g00817 341 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00817 Cca-Chr11 15634976 15636412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00817 1 339 MYB Transcription Factor Family AT3G02940 43.642 2.42e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca11g00817 Myb_DNA-binding 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00817 K09422 - gmx:100803906 512.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00817 11 15634976 15636412 Cca11g00817 11 15634976 15636412 ECH
Cca06g00972 06 23466457 23468191 Cca11g00817 11 15634976 15636412 PCT