Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00814 ATGGACTACGCTCGAGAGGGGAACGTGGTGCAAATAATCGCCGCCGCCTCGGGAGGGGGCGGCGGCGGCGACAGCTGGTCCGGCGAGCAGGCGGATTGGGCGACGGAGGACGAGTACCGGTTCTGGAACAGCGGCAACAACGGGGAGGGCGAAACGACGGCGTCGAACTCGAATTACGAGGCGCGGTCGCGTTCGGGGAGCGAGCCTCCGAGCAAGAAGTCGCGGAACTCGCAGCAGGAGGGGAACTCGAACCGGTCGAAGGCGATTGGGAAGATGTTCTTCAAGACGAAGCTTTGCTGCAAGTTCAGGGCTGGCACGTGCCCTTACATCACCAACTGCAACTTCGCCCACAGCATCGAGGAGCTCCGCCGCCCTCCGCCCAACTGGCAGGAGATCGTGGCGGCGCACGAGGAGGAGAAGGCCGTCCTGACGGAGCCCCGGGAGGAGTTTCAGATTCCCACCGTTGGCTCCTCCACCTTTGCTGGCGACATGATGCAGCGCTCCTACAAGGGCAGGCATTGCAAGAAGTTCTACACCGAGGAAGGGTGCCCCTATGGCGATAGTTGCACCTTTCTTCACGATGAGCAATCCAAGAACCGCGAGAGTGTCGCCATCAGTTTGGGCCCtggtggctatgctggtggcggcggtagcaatggtggtggtgggggtgggggtgggggtggtggtagcggcggcggcggtgcggcggcgagtgctgctggGAATGGGCCCAATTCGAAGCCCTCTAATTGGAAAACCAGGATTTGCAATAAGTGGGAGATGACTGGGTATTGCCCCTTTGGCAACAAATGCCATTTTGCTCATGGTAGCACAGTATGTTTGCATACCAGAGAAACATGCTTATGA 870 0.5218 MDYAREGNVVQIIAAASGGGGGGDSWSGEQADWATEDEYRFWNSGNNGEGETTASNSNYEARSRSGSEPPSKKSRNSQQEGNSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEEKAVLTEPREEFQIPTVGSSTFAGDMMQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYAGGGGSNGGGGGGGGGGGSGGGGAAASAAGNGPNSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGSTVCLHTRETCL 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00814 289 Gene3D - 88 124 - -
Cca11g00814 289 Gene3D - 245 279 - -
Cca11g00814 289 Gene3D - 161 208 - -
Cca11g00814 289 MobiDBLite consensus disorder prediction 40 86 - -
Cca11g00814 289 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 242 279 - -
Cca11g00814 289 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 22 210 - -
Cca11g00814 289 PANTHER CCCH ZINC FINGER/TIS11-RELATED 242 279 IPR045877 GO:0003729
Cca11g00814 289 PANTHER CCCH ZINC FINGER/TIS11-RELATED 22 210 IPR045877 GO:0003729
Cca11g00814 289 MobiDBLite consensus disorder prediction 37 87 - -
Cca11g00814 289 ProSiteProfiles Zinc finger C3H1-type profile. 93 120 IPR000571 GO:0046872
Cca11g00814 289 SUPERFAMILY CCCH zinc finger 167 196 IPR036855 GO:0046872
Cca11g00814 289 Pfam CCCH-type zinc finger 172 194 IPR041367 -
Cca11g00814 289 ProSiteProfiles Zinc finger C3H1-type profile. 251 279 IPR000571 GO:0046872
Cca11g00814 289 SUPERFAMILY CCCH zinc finger 91 124 IPR036855 GO:0046872
Cca11g00814 289 MobiDBLite consensus disorder prediction 224 250 - -
Cca11g00814 289 ProSiteProfiles Zinc finger C3H1-type profile. 168 196 IPR000571 GO:0046872
Cca11g00814 289 SUPERFAMILY CCCH zinc finger 249 278 IPR036855 GO:0046872
Cca11g00814 289 SMART c3hfinal6 251 278 IPR000571 GO:0046872
Cca11g00814 289 SMART c3hfinal6 93 119 IPR000571 GO:0046872
Cca11g00814 289 SMART c3hfinal6 168 195 IPR000571 GO:0046872
Cca11g00814 289 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 252 277 IPR000571 GO:0046872
Cca11g00814 289 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 118 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00814 Cca-Chr11 15482217 15485074 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00814 253 277 C3H Transcription Factor Family AT1G68200 64.000 4.57e-06 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca11g00814 zf-CCCH 9.3e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00814 - - gmx:100788208 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00814 11 15482217 15485074 Cca11g00814 11 15482217 15485074 ECH