Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00813 ATGTCCACGTCGGAGTACGAAATGGCACCGGCCGCTCCGCCGTACAACACCCCGCCGGCGCTGATAGCCTTCACGCTTGGCATCCTGGTGGTGTGCTTCGTGGCCTTCAGCATCGTGTACTTGTGCAAGTACTGCTTCACCAGCGTGATCCAAACGTGGGCCTTCCAACGCACCGCATCGGGCTCCCTCGTTCGCCTCACGCCCCACCGCTCCCCCCCTCGGGGCCTCGACCCTTCCCTGCTCCATCTCTTCCCCACCTTCCCCTACTCCTCCGTCAAGGGCCTCCGCAAGGAGAAGTACAGCCTCGAATGCGCCATCTGCTTGCTCGAGTTCGAGGACGACAACATGCTCCGCCTCTTGACCCTCTGCTGCCACGTCTTCCACCAGGACTGCATCGACCTCTGGCTCCGCTCCCACAAGACCTGTCCCGTTTGTAGACGTGACCTTGACCACCCAGCTGTCGACGAGCCGCAGAAGCTCGTCGACCCAGAGGACGTCCTGGTCACGTCCATCAACCAGGACGTTAGGATAGACGTGAGAGAAGACaatgataataataacaacaatgacaataacaataataacgacattaacaacaataaaaatcaaagacaaggacaaggagaaGAGGCTGCAGAAGGTGGACATGAAATTCAATTTCAACCGGAACAAACGTTTGTACGGTCGCACTCCACGGGGCACTCGATAGTTTTGATTAGAGACGAGGAGGGTGAGGGGAAGGGTGATGATAAGTATACATTGAGGTTGCCGGAGCATGTTTTGAGAGTGAGGCATAATTGTACGAGGAGCTGTGCGAGTTTTAAGGATGCTGAACCTTGTAGTAATTGTGGCTTCGTTCAACCCCGATCACCCGGGTGCTCCTCCCCTCCCCAAACTCAAGAACCTTGA 909 0.5248 MSTSEYEMAPAAPPYNTPPALIAFTLGILVVCFVAFSIVYLCKYCFTSVIQTWAFQRTASGSLVRLTPHRSPPRGLDPSLLHLFPTFPYSSVKGLRKEKYSLECAICLLEFEDDNMLRLLTLCCHVFHQDCIDLWLRSHKTCPVCRRDLDHPAVDEPQKLVDPEDVLVTSINQDVRIDVREDNDNNNNNDNNNNNDINNNKNQRQGQGEEAAEGGHEIQFQPEQTFVRSHSTGHSIVLIRDEEGEGKGDDKYTLRLPEHVLRVRHNCTRSCASFKDAEPCSNCGFVQPRSPGCSSPPQTQEP 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00813 302 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Cca11g00813 302 CDD RING-H2_EL5_like 103 146 - -
Cca11g00813 302 PANTHER RING-H2 FINGER PROTEIN ATL29 7 277 - -
Cca11g00813 302 SUPERFAMILY RING/U-box 98 152 - -
Cca11g00813 302 Pfam Ring finger domain 103 146 IPR001841 -
Cca11g00813 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 152 IPR013083 -
Cca11g00813 302 SMART ring_2 104 145 IPR001841 -
Cca11g00813 302 MobiDBLite consensus disorder prediction 186 207 - -
Cca11g00813 302 PANTHER RING FINGER DOMAIN-CONTAINING 7 277 - -
Cca11g00813 302 MobiDBLite consensus disorder prediction 177 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00813 Cca-Chr11 15479756 15480804 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00813 19 272 Rapid Response to Elicitors AT2G35000 34.091 1.82e-36 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00813 - - gmx:100815505 397.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00966 06 23369853 23370809 Cca11g00813 11 15479756 15480804 PCT