Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00810 ATGGCTTTGGAAACTCTTTCATCCAACGAGTTTTCCAACTTCATATTGTATGACACTATCTCTGCAACTCCATATACCAATCATGATTCTTCGGAGGCTAGTTTCTTGGAAAGTTTAGTGAACTATCAGGAGCATGACCCTGCATATGATAACTATGCAATGAGGACCCGAAAGCGCCAAGCCAGCGAGCCAGAAATCATTGGCAAGAAGCAGAATGTGGTGGGGGTGCAAAGTAGGAAGAAGAGGAGAAGGAAGCCAAGGGTTTGCAAGAACAAGGAAGAGGCTGAGACACAAAGAATCACCCACATTACAGTGGAAAGAAACCGCCGGAAGCAGATGAATGAGCATCTTTCTGTCCTCCGTTCACTCATGCCTGAGTCCTACGTCCAAAGGGGTGACCAGGCCTCTATAGTGGGTGGTGCCATAGAGTTTGTGAAGGAGCTGGAGCACCTCTTGCAATCACTTGAAGCTAGAAAGCTGCAACTTTTACAGCAAGAAGTGGCACAAACCAATGAAAATACGGCGATTTCCAAACTCATGCAACCACCTTTTGCAGAATTTTTTTTGTATCCTCAGTACACATGGTCCCAGACTCCTAACAAATACACATCAAAGACCAAAGCTGCCATAGCTGATATCGAGGTCACTTTGATCGAGACCCATGCAAATCTTCGAATTCTCACAAGGAGAAGCCCTGGGCTACTAACAAAGTTGATTGCTGGTTTTCAAACACTTCATCTCACCATCCTACATCTCAATGTCACCACCATAGACCCTTTGGTCTTCTATTCCATCAGTGCTAAGGTTGAAGAAGGATTCCAACTTGGTTCAGTAGATGGTATTGCAACGGCAGTTCATCATTTGCTTGCAAGAATTGAAGAAGAAGCTTCCCTTTGTTGTTGA 903 0.4463 MALETLSSNEFSNFILYDTISATPYTNHDSSEASFLESLVNYQEHDPAYDNYAMRTRKRQASEPEIIGKKQNVVGVQSRKKRRRKPRVCKNKEEAETQRITHITVERNRRKQMNEHLSVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQSLEARKLQLLQQEVAQTNENTAISKLMQPPFAEFFLYPQYTWSQTPNKYTSKTKAAIADIEVTLIETHANLRILTRRSPGLLTKLIAGFQTLHLTILHLNVTTIDPLVFYSISAKVEEGFQLGSVDGIATAVHHLLARIEEEASLCC 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00810 300 CDD bHLH_AtFAMA_like 100 159 - -
Cca11g00810 300 Gene3D - 89 170 IPR036638 GO:0046983
Cca11g00810 300 Pfam Helix-loop-helix DNA-binding domain 98 149 IPR011598 GO:0046983
Cca11g00810 300 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 97 148 IPR011598 GO:0046983
Cca11g00810 300 SMART finulus 103 154 IPR011598 GO:0046983
Cca11g00810 300 PANTHER MAX DIMERIZATION, MAD 1 299 - -
Cca11g00810 300 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 96 166 IPR036638 GO:0046983
Cca11g00810 300 Coils Coil 145 165 - -
Cca11g00810 300 PANTHER TRANSCRIPTION FACTOR BHLH71 1 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00810 Cca-Chr11 15424801 15426877 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00810 89 269 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 54.945 3.35e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca11g00810 HLH 5.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00810 - - pvu:PHAVU_003G284500g 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00810 11 15424801 15426877 Cca11g00810 11 15424801 15426877 ECH