Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00809 ATGGCTGCTGTTGGGAACCCAAGAACTTGGATTCCATATATGAACAGCAAAGATTGTTCCGAAGGATTTTGCAGCTTGTACTGTCCACAGTGGTGTTATATAGTGTATCCTCCTCCTCCACCCTTTGAGTACCCTGATGATGATTCAGGCCCAAATTTCTCTCCTCTTGTCATTGCAATCATTGGGATCTTAGCCACTGCTTTTCTTCTGGTGAGTTACTACACTCTAATATCCAAGTACTGTGGCCTCCGAGAGTCTCCACTCAGAGACCCAAATGATGAGTTGCAAGAGAATCACAACCACAATCAAAATCACGAACCATGCCATGCTTCCACCACAGGCCTGGACGAGTCTCTAATAAAATCCATTGCAGTTTTCAAGTACAAGAAAGGATACAATAGAGTCACTGATTGTTCAGTTTGTCTGAGTGAGTTTCAAGATAATGAAAGTGTTAGACTCTTGCCGAAATGCAGCCACGTTTTCCACCTTCCTTGCATTGACACGTGGCTCAAGTCTCACTCCACATGCCCCTTGTGTCGTGCTTGCATATTCACTTCCAATGCCTCGGTTCCTGCCCCAGAGGTAGAGAATGAAACTTCTTCTGAAAACGAGTTTGTGGTGGTGGTGGAAGAAGAAAGCATGCATCATGCTAGAGCTTATCCAAAGCCTGCATTGCGTGCTTTTAGTGATTTAAGCAGCTTTCAGGGCAGGCACAGGGTGATTGAGATTAGAGATGGAGCGTGCGAATCCTTTGGTATGTCTGAGTCTATGGACCATTCGTTTCAAAGTGTTGCTCATGTGTTGCAATTGCAAATGAATCAAGTACAAGGGTGTTCTACTGAAGCTGGCCCATCGAAGAGATCACAAAGAGAGAATAGCAAGTCGTCCAGATACAAAACAAGGGTGTTGCATTGTGTGTTGAGCCCAATTGCAATGAAGAGATCGTTCTCCAGTGGAAGACTCTCGATTACCAAAAGTGGCAGAGGAAGGCACGGAACGATACCAATCTCAGAATTTGTTTTATGTTAG 1029 0.4461 MAAVGNPRTWIPYMNSKDCSEGFCSLYCPQWCYIVYPPPPPFEYPDDDSGPNFSPLVIAIIGILATAFLLVSYYTLISKYCGLRESPLRDPNDELQENHNHNQNHEPCHASTTGLDESLIKSIAVFKYKKGYNRVTDCSVCLSEFQDNESVRLLPKCSHVFHLPCIDTWLKSHSTCPLCRACIFTSNASVPAPEVENETSSENEFVVVVEEESMHHARAYPKPALRAFSDLSSFQGRHRVIEIRDGACESFGMSESMDHSFQSVAHVLQLQMNQVQGCSTEAGPSKRSQRENSKSSRYKTRVLHCVLSPIAMKRSFSSGRLSITKSGRGRHGTIPISEFVLC 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00809 342 MobiDBLite consensus disorder prediction 278 297 - -
Cca11g00809 342 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Cca11g00809 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 188 IPR013083 -
Cca11g00809 342 SUPERFAMILY RING/U-box 137 189 - -
Cca11g00809 342 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 327 - -
Cca11g00809 342 MobiDBLite consensus disorder prediction 92 112 - -
Cca11g00809 342 Pfam Ring finger domain 137 180 IPR001841 -
Cca11g00809 342 SMART ring_2 138 179 IPR001841 -
Cca11g00809 342 CDD RING-H2_PA-TM-RING 137 180 - -
Cca11g00809 342 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 327 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00809 Cca-Chr11 15397166 15398974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00809 1 219 C3H Transcription Factor Family AT3G03550 50.000 8.56e-64 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00809 - - vun:114176645 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00809 11 15397166 15398974 Cca11g00809 11 15397166 15398974 ECH
Cca06g00965 06 23359065 23361061 Cca11g00809 11 15397166 15398974 PCT