Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00801 ATGACTAGAAAACATTATAATGGAGATGACTCCCATGATGATAATACATCGAAGCCAATCCACTTTTTTAGAATCATGCTCTCTCACAACCTTTTGCAAGGAAAACTAAGGATTCCAGCAAAGTTTGTGCGAAAATATGGAAAACACTTATCCAACACGGTGTTTCTTAAGCTTCCAAACGGTGCAGAATGGAGGGTCAATTTGGAGAAACGTGATGACAGTGTTTGGTTCCAAAAAGGTTGGAAAGAGTTTGTGGCGTATCACTCTCTAGCCCATGGGAACCTATTGGTTTTCAGATACGATGGAACACCCCATTTTCATGTACTCATTTGTGATATGAGTGCCACAGAAATAGAATACCCAGTTAGCAAACCAAATCACAAAAGGGCCAAAATTAGTAAGACAAAAATTGAAGGGTCGTCCATTAGTAATTATGGAGAAGATGAAGCAGCTGGGATTACTTCCTTCACAGTGATAATGAAATCAAGCCACTTAATTAGAACAAGTATGTATCTTCCGAAGAACCCACTGAAGGGCTACATCAAATTTGGTGAACAATATGTAAAGCTTCTGGTTGAGAACAGATCATGGAGGGTTAAATTGAGCCATTATAAAAATAATTCAGGAAGTTATTTTACTACACAATGGCCAATTTTTGTGAGAGAAAACAATTTAAAAGAAGGAGATGCTTGCTTATTCCAACTCCTAAACAGTAGTGATGACGTGGTGATGAGGGTTTCTATTTCTAGATACTCCTCTCTTAAGGAATAA 771 0.3774 MTRKHYNGDDSHDDNTSKPIHFFRIMLSHNLLQGKLRIPAKFVRKYGKHLSNTVFLKLPNGAEWRVNLEKRDDSVWFQKGWKEFVAYHSLAHGNLLVFRYDGTPHFHVLICDMSATEIEYPVSKPNHKRAKISKTKIEGSSISNYGEDEAAGITSFTVIMKSSHLIRTSMYLPKNPLKGYIKFGEQYVKLLVENRSWRVKLSHYKNNSGSYFTTQWPIFVRENNLKEGDACLFQLLNSSDDVVMRVSISRYSSLKE 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00801 256 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1-LIKE 153 250 - -
Cca11g00801 256 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1-LIKE 15 124 - -
Cca11g00801 256 CDD B3_DNA 155 250 IPR003340 GO:0003677
Cca11g00801 256 SUPERFAMILY DNA-binding pseudobarrel domain 17 113 IPR015300 -
Cca11g00801 256 SUPERFAMILY DNA-binding pseudobarrel domain 154 246 IPR015300 -
Cca11g00801 256 PANTHER B3 DOMAIN-CONTAINING 15 124 - -
Cca11g00801 256 Gene3D - 136 253 IPR015300 -
Cca11g00801 256 CDD B3_DNA 21 112 IPR003340 GO:0003677
Cca11g00801 256 Gene3D - 14 115 IPR015300 -
Cca11g00801 256 PANTHER B3 DOMAIN-CONTAINING 153 250 - -
Cca11g00801 256 Pfam B3 DNA binding domain 24 112 IPR003340 GO:0003677
Cca11g00801 256 Pfam B3 DNA binding domain 156 249 IPR003340 GO:0003677
Cca11g00801 256 ProSiteProfiles B3 DNA-binding domain profile. 155 252 IPR003340 GO:0003677
Cca11g00801 256 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
Cca11g00801 256 SMART B3_2 156 252 IPR003340 GO:0003677
Cca11g00801 256 SMART B3_2 22 114 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00801 Cca-Chr11 15334458 15336110 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00801 22 139 B3 DNA Binding Superfamily AT1G49475 37.288 9.13e-26 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca11g00801 B3 4e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00801 - - gmx:100793986 328.946