Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00799 ATGAAAGGAAATAAAAAGGAAAGAAGGAGGTGGATTCCTTACACACAACGCATCTGTTGGTTCGGAGCTAGAGACAAGCCCTTCTACTTCTACCGCCTCCAAGTCCTACAAGAACCCATTCCCTCCCACACCCTCCCAAAATCCCACTCTCTCTTCTTCCCAAACACACTCTCCTCTTTTTCCATCCTCCCACTTTCTCACCATCTCTCTCCAGTTACTGCCTTCAAGCTGGCGTTCGAAAACCAAGGCACCACTGTCCGCGAAATCAAGCCCAAGAACCGGAGAATCATGGGTGCTGGAAGCCCTGATGATGAGGACAACAGGTGGCCACCGTGGTTGAAACCTCTGCTCAAAGAGAGCTTCTTCGTTCAATGCAAGTTGCACGCTGATTCACACAAGAGCGAGTGCAATATGTACTGTTTGGATTGTATGAACGGTGCTTTATGCTCTCTCTGTCTCGCTTACCACAAAGATCACCGTGCTATTCAGATAAGGAGATCCTCGTACCACGATGTGATTAGGGTGAACGAGATTCAGAAGGTGTTGGACATAACCGGAGTCCAAACCTACATTATCAACAGTGCAAGGGTTGTTTTCTTGAATGAGAGGCCTCAGCCAAGGCCTGGTAAAGGTGTCACCAACACTTGTGAAGTCTGCGAGCGTAGCCTTCTTGATTCCTACCGATTCTGTTCTCTTGGTTGCAAGATTGTTGGAACTTCAAGGAACTTCGAGAAGAAGAAAAAGTAG 747 0.4766 MKGNKKERRRWIPYTQRICWFGARDKPFYFYRLQVLQEPIPSHTLPKSHSLFFPNTLSSFSILPLSHHLSPVTAFKLAFENQGTTVREIKPKNRRIMGAGSPDDEDNRWPPWLKPLLKESFFVQCKLHADSHKSECNMYCLDCMNGALCSLCLAYHKDHRAIQIRRSSYHDVIRVNEIQKVLDITGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCERSLLDSYRFCSLGCKIVGTSRNFEKKKK 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00799 248 Pfam PLATZ transcription factor 165 236 IPR006734 -
Cca11g00799 248 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 84 247 - -
Cca11g00799 248 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 84 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00799 Cca-Chr11 15222922 15224784 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Cca11g00799 PLATZ 7.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00799 - - vra:106774881 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00799 11 15222922 15224784 Cca11g00799 11 15222922 15224784 ECH
Cca06g00962 06 23328676 23331870 Cca11g00799 11 15222922 15224784 PCT