Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00798 ATGGTCGTGAATGAAAAATGTGATGTTTTTAGTTTCGGAGTAGTGACACTTGAAATTTTGGTGGGGAAACATCCTAAGGAAATCCTGTCATCACTCCAATCAGCATCAACTCGTATCATCACATTATATGAACTATTGGATCGGCGCCTCCCATCACCAAATATTGAAGTTTCACTAGACATAGTTCGTGTTGCTATGATAGCATTTGCATGCTTGAATCCCAATCCTTGTTCTCGTCCAACGATGAAACAAGTGTCTCAATGTTTTTTGAGTCAGCCAACTCCATTACTCATTCCTTTGCATGAAATTTCGTTGCAGCAGCTCGTGAGACAAGAACTCCAATCATCTGGAATTGTCAACTCCGCGTAG 369 0.4092 MVVNEKCDVFSFGVVTLEILVGKHPKEILSSLQSASTRIITLYELLDRRLPSPNIEVSLDIVRVAMIAFACLNPNPCSRPTMKQVSQCFLSQPTPLLIPLHEISLQQLVRQELQSSGIVNSA 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00798 122 Gene3D Transferase(Phosphotransferase) domain 1 1 93 - -
Cca11g00798 122 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1 115 - -
Cca11g00798 122 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 1 115 - -
Cca11g00798 122 Pfam Protein tyrosine and serine/threonine kinase 3 88 IPR001245 GO:0004672|GO:0006468
Cca11g00798 122 SUPERFAMILY Protein kinase-like (PK-like) 3 110 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00798 Cca-Chr11 15216801 15217169 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00798 6 90 Receptor kinase-like Gene Family AT5G49660 36.559 3.96e-10 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca11g00798 PK_Tyr_Ser-Thr 4.1e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00798 - - gmx:102666504 163.696