Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00797 ATGGCGTCCGAAGGCTTCACCGATAAGAACCTTGTGTTTAGGAAACTCAAGGCGAAGTCCGAAAATAAGATGTGTTTCGATTGCAATGCGAAGAACCCTACCTGGGCTTCCGTCACGTATGGGATCTTCCTGTGCATCGATTGCTCCGCCGTTCATCGTAGTCTCGGCGTGCACATCAGCTTCGTGAGGTCTACAAATTTAGACTCATGGAGTCCCGAGCAACTAAAAATGATGAGCTTTGGAGGAAACAATCGTGCTCAGGTTTTCTTTAAGCAGCATGGTTGGACTGATGGTGGTAAAATAGAGGCTAAATATACATCCAGAGCTGCAGACTTATATAGGCAAATTCTTACAAAGGAAGTAGCTAAAAGTATGGCTGAGGATGGAGGCTTACCTTCATCACCTGTTGCTTCTCAGTCTGCCCAGGGGGTTAATGGGCTTCCTGAAGTTAGGACCAATGAAGTGCCAAAAGAAAGCACTCTGGAGAAGCCTGAAAAGCCTGAAAGCACTTCTTCACCTAGAGCTTCACATACAGTAGTTTCAAGTACCATCAAGAAACCTATTGGTGCTAAAAAACCTGGGAAGAGTGGGGGGCTTGGTGCTCGTAAACTTGTTAAAAAGCCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCACCTGCTCCAGTTTCATCCTCCACAAATAATATGCCTGCTGGGCCGTCTCTCACATCTCGGTTTGAGTATGTAGAAAATGTCCAATCATCTGAGTTGAACACTGGTGGTTCACATTTGATTAGTCATGTGTCTCCACCAAAGTCGTCAAGCTTCTTTGCAGACTTTGGAATGGATGGTGGCTTTCCAAAGAAATCTGGGTCAAGCTCCTCCAAAGTACAAATTCAGGAAACTGATGAAGCAAGAAGAAAGTTCTCAAATGCCAAGTCTATTTCTTCATCCCAATATTTTGGAGATCAGAACAAAGCTGCTGATATGGATTCTCAAGCTACTTTGTCTAAGTTTTCGGGTTCAACTGCCATTTCCAGTGCTGATCTTTTTGGTGACTCAAGAGACAACTCCATTGATCTCACTGCTGGCGACCTCATCAATCGATTATCTTTCCAGGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAGAAGCTCACCTCATTGGCCTCCACATTGATGACGGATCTTCAGGACCGAATCCTCTAA 1212 0.4497 MASEGFTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLKMMSFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQILTKEVAKSMAEDGGLPSSPVASQSAQGVNGLPEVRTNEVPKESTLEKPEKPESTSSPRASHTVVSSTIKKPIGAKKPGKSGGLGARKLVKKPSESLYEQKPEEPPAPVSSSTNNMPAGPSLTSRFEYVENVQSSELNTGGSHLISHVSPPKSSSFFADFGMDGGFPKKSGSSSSKVQIQETDEARRKFSNAKSISSSQYFGDQNKAADMDSQATLSKFSGSTAISSADLFGDSRDNSIDLTAGDLINRLSFQAQQDLSSLKNIAGETGKKLTSLASTLMTDLQDRIL 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00797 403 MobiDBLite consensus disorder prediction 133 147 - -
Cca11g00797 403 MobiDBLite consensus disorder prediction 221 237 - -
Cca11g00797 403 MobiDBLite consensus disorder prediction 126 237 - -
Cca11g00797 403 MobiDBLite consensus disorder prediction 282 306 - -
Cca11g00797 403 Pfam Putative GTPase activating protein for Arf 12 106 IPR001164 GO:0005096
Cca11g00797 403 Gene3D Arf GTPase activating protein 2 135 IPR038508 -
Cca11g00797 403 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Cca11g00797 403 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD9-RELATED 1 403 - -
Cca11g00797 403 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 1 403 - -
Cca11g00797 403 CDD ArfGap_ArfGap2_3_like 8 123 - -
Cca11g00797 403 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Cca11g00797 403 SUPERFAMILY ArfGap/RecO-like zinc finger 12 125 IPR037278 -
Cca11g00797 403 MobiDBLite consensus disorder prediction 155 170 - -
Cca11g00797 403 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Cca11g00797 403 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Cca11g00797 403 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00797 Cca-Chr11 15198697 15209157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00797 13 91 C2H2 Transcription Factor Family AT4G21160 46.250 1.06e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00797 K12493 K11855 gmx:100785169 751.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00797 11 15198697 15209157 Cca11g00797 11 15198697 15209157 ECH
Cca06g00952 06 23232314 23239221 Cca11g00797 11 15198697 15209157 PCT